PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4v1aj_

Fold library id	PDB Header	Molecule	Title
c4v1aj_	PDB header: ribosome	Chain: J: PDB Molecule:	PDBTitle: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 2 of 2

Links to external resources
Added to library: Sat Oct 11 08:33:05 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S P W R L L G A L C L Q R P P L V T K P L T P L Q E E M A D L L Q Q I E I E R S L Y S D H E L R A L D E A Q Q L A K K K S D L A Q D L E D M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W E Q K F L H F K L G A R L T E A D K K D D R T S L H R K L D R N L I L L V R E K L G D Q D I W M L P Q S D W Q P G E T L R Q T A E R T L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S T T T
S S
T T S
S S S
B T T S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T L S E N N M E A K F L G N A P C G H Y K F K F L G A K V F F F K A L L L T G D F S Q A G K K G H H V W V S K E E L G D Y L K P K Y L A Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S
S
T T S S S
S T T

. . . . . . .

Sequence R R F L L D L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	P	W	R	L	L	G	A	L	C	L	Q	R	P	P	L	V	T	K	P	L	T	P	L	Q	E	E	M	A	D	L	L	Q	Q	I	E	I	E	R	S	L	Y	S	D	H	E	L	R	A	L	D	E	A	Q	Q	L	A	K	K	K	S	D	L	A	Q	D	L	E	D	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													B				S																						S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	E	Q	K	F	L	H	F	K	L	G	A	R	L	T	E	A	D	K	K	D	D	R	T	S	L	H	R	K	L	D	R	N	L	I	L	L	V	R	E	K	L	G	D	Q	D	I	W	M	L	P	Q	S	D	W	Q	P	G	E	T	L	R	Q	T	A	E	R	T	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S						S		S	S	T	T	T				S	S		T	T	S		S	S	S		B									T	T						S							T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	L	S	E	N	N	M	E	A	K	F	L	G	N	A	P	C	G	H	Y	K	F	K	F	L	G	A	K	V	F	F	F	K	A	L	L	L	T	G	D	F	S	Q	A	G	K	K	G	H	H	V	W	V	S	K	E	E	L	G	D	Y	L	K	P	K	Y	L	A	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T										S	S		S																									S		T	T	S	S	S																S					T	T
	.	.	.	.	.	.	.
Sequence	R	R	F	L	L	D	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S