PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4v191_

Fold library id	PDB Header	Molecule	Title
c4v191_	PDB header: ribosome	Chain: 1: PDB Molecule: mitoribosomal protein bl28m, mrpl28;	PDBTitle: structure of the large subunit of the mammalian2 mitochondrial ribosome, part 1 of 2

Links to external resources
Added to library: Sat Oct 11 08:21:45 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P L H K V P V G L W K Q L R L W E G I Y S R L P R H Y L R S L E E A R T P T P V H Y R P H G A K F K I N P K N W Q R E R V E D V P I P V H Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G T T T S G G G G G S
S S S
S
T T T
S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P P E S Q L G L W G G E G W V L G H R Y V N N D K L S K R V R K V W K P Q L F Q R E L Y S E I L D K R F T V T V T M R T L D L I D Q A C G F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G S B
T T
B G G G
T T S
T T T T
T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D F Y I L K T P K E D L C S K F G M D L K R G M L L R L A R Q D P Q L H P D D P A R R A A I Y D R Y K A F V I P E A E A E W V G L T L D E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T
T T S S T T
T G G G
T T S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . .

Sequence V E K Q R L L E E K D P I P L F K I F V E E L L G Q L Q Q Q A L S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	L	H	K	V	P	V	G	L	W	K	Q	L	R	L	W	E	G	I	Y	S	R	L	P	R	H	Y	L	R	S	L	E	E	A	R	T	P	T	P	V	H	Y	R	P	H	G	A	K	F	K	I	N	P	K	N	W	Q	R	E	R	V	E	D	V	P	I	P	V	H	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S		G	G	G					T	T	T	S	G	G	G	G	G	S																	S	S	S						S					T	T	T		S												B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	P	E	S	Q	L	G	L	W	G	G	E	G	W	V	L	G	H	R	Y	V	N	N	D	K	L	S	K	R	V	R	K	V	W	K	P	Q	L	F	Q	R	E	L	Y	S	E	I	L	D	K	R	F	T	V	T	V	T	M	R	T	L	D	L	I	D	Q	A	C	G	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	G	G	G	S	B		T	T			B							G	G	G		T	T	S																			T	T	T	T																		T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	F	Y	I	L	K	T	P	K	E	D	L	C	S	K	F	G	M	D	L	K	R	G	M	L	L	R	L	A	R	Q	D	P	Q	L	H	P	D	D	P	A	R	R	A	A	I	Y	D	R	Y	K	A	F	V	I	P	E	A	E	A	E	W	V	G	L	T	L	D	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S																								T		T	T	S	S	T	T												T	G	G	G								T	T	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Sequence	V	E	K	Q	R	L	L	E	E	K	D	P	I	P	L	F	K	I	F	V	E	E	L	L	G	Q	L	Q	Q	Q	A	L	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T