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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4v0qA_

Fold library idPDB HeaderMoleculeTitle
c4v0qA_PDB header: transferaseChain: A: PDB Molecule: ns5 polymerase;PDBTitle: dengue virus full length ns5 complexed with sah


Added to library: Sat Jan 31 08:21:33 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GETLGEKWKKKLNQLSRKEFDLYKKSGITEVDRTEAKEGLKRGETTHHAVSRGSAKLQWFVERNMVIPEG
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Known secondary structure (DSSP)


TTS
TTTT


TT

SSB
SSTTTS



 .........80.........90.........100.........110.........120.........130.........140
Sequence RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCDTLLC
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Known secondary structure (DSSP) T
TT
TTSTT


STTS






STTGGG
S

GGG





S
 .........150.........160.........170.........180.........190.........200.........210
Sequence DIGESSPSPTVEESRTIRVLKMVEPWLKNNQFCIKVLNPYMPTVIEHLERLQRKHGGMLVRNPLSRNSTH
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Known secondary structure (DSSP)





SSGGG
SSSS


S



TTS
TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence EMYWISNGTGNIVSSVNMVSRLLLNRFTMTHRRPTIEKDVDLGAGTRHVNAEPETPNMDVIGERIKRIKE
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Known secondary structure (DSSP)
SS



S







B


S


GGG





 .........290.........300.........310.........320.........330.........340.........350
Sequence EHNSTWHYDDENPYKTWAYHGSYEVKATGSASSMINGVVKLLTKPWDVVPMVTQMAMTDTTPFGQQRVFK
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Known secondary structure (DSSP) TTTT
B

TT


SSS





SS

B
SS
GGGSS
TTS



S
 .........360.........370.........380.........390.........400.........410.........420
Sequence EKVDTRTPRPLPGTRKVMEITAEWLWRTLGRNKRPRLCTREEFTKKVRTNWDSAKAAVEDEEFWKLVDRE
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Known secondary structure (DSSP) TS






TSS






T

TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence RELHKLGKCGSCVYNMMSRAIWYMWLGVRYLEFEALGFLNEDHWFSRENSYSGVEGEGLHKLGYILRDIS
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Known secondary structure (DSSP) TT

SS




TTTTTSSSB
TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence KIPGGAMYADDTAGWDTRITEDDLHNEEKIIQQMDPEHRQLANAIFKLTYQNKVVKVQRPTPTGTVMDII
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Known secondary structure (DSSP) TS
SS
BB


BTTGGGG

GGGGGGS
TTSSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence SRKDQRGSGQVGTYGLNTFTNMEAQLVRQMEGEGVLTKADLENPHLLEKKITQWLETKGVERLKRMAISG
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Known secondary structure (DSSP) SSS

SSSTTTTSS

TT

STTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence DDCVVKPIDDRFANALLALNDMGKVRKDIPQWQPSKGWHDWQQVPFCSHHFHELIMKDGRKLVVPCRPQD
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Known secondary structure (DSSP) T

SSGGGGG

TT

BSSS
TTS



BSSGGG

BTTB
TTS


 .........710.........720.........730.........740.........750.........760.........770
Sequence ELIGRARISQGAGWSLRETACLGKAYAQMWSLMYFHRRDLRLASNAICSAVPVHWVPTSRTTWSIHAHHQ
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Known secondary structure (DSSP) TB

SSS

TSTTSSS
TT



S
S


TT


T
 .........780.........790.........800.........810.........820.........830.........840
Sequence WMTTEDMLTVWNRVWIEENPWMEDKTPVTTWENVPYLGKREDQWCGSLIGLTSRATWAQNIPTAIQQVRS
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Known secondary structure (DSSP) TSSSS
TTS
TT








GGGS



TT

TTST
 .........850.
Sequence LIGNEEFLDYM
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Known secondary structure (DSSP)
S







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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