PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4uxdC_

Fold library id	PDB Header	Molecule	Title
c4uxdC_	PDB header: lyase	Chain: C: PDB Molecule: 2-dehydro-3-deoxy-d-gluconate/2-dehydro-3-deoxy-	PDBTitle: 2-keto 3-deoxygluconate aldolase from picrophilus torridus

Links to external resources
Added to library: Sat Oct 3 08:24:52 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M Y K G I V C P M I T P L D A H G N I D Y N A T N I L I K Y L E G I N V D Y L F P M G S T G V F P Y F T L K E R K D F L K F V R E N S K K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T S S B
T
S T T S T T T T G G G S
T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I M A G V G S S S I N E V N E L M K F S M D I G I E A A V L M P P Y Y I K L N Q E A I Y H Y Y K E I L S S N D M D L L I Y N I P Q F T N K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S
T T
S S
T T
S
T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D P E T V K N L K S E F S S V K G V K D S S A D I R G F M E M L S L S D D D F A V F Q G Q D D L L F T S L E L G A S G G V C G T T N F S D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
B T T B
G G G T T
G G G G T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . .

Sequence I V R L Y H E Y K N N R E M A L K I E K N D V I P L M K K L G K Y Q F P N A Y Y E Y F Y K K N N I N G G Y R P P M Y R V G I E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T S S T T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	Y	K	G	I	V	C	P	M	I	T	P	L	D	A	H	G	N	I	D	Y	N	A	T	N	I	L	I	K	Y	L	E	G	I	N	V	D	Y	L	F	P	M	G	S	T	G	V	F	P	Y	F	T	L	K	E	R	K	D	F	L	K	F	V	R	E	N	S	K	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													B		T	T	S	S	B																T		S				T	T	S	T	T	T	T	G	G	G	S															T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	M	A	G	V	G	S	S	S	I	N	E	V	N	E	L	M	K	F	S	M	D	I	G	I	E	A	A	V	L	M	P	P	Y	Y	I	K	L	N	Q	E	A	I	Y	H	Y	Y	K	E	I	L	S	S	N	D	M	D	L	L	I	Y	N	I	P	Q	F	T	N	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B							S															T	T											S	S																T	T			S								T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	P	E	T	V	K	N	L	K	S	E	F	S	S	V	K	G	V	K	D	S	S	A	D	I	R	G	F	M	E	M	L	S	L	S	D	D	D	F	A	V	F	Q	G	Q	D	D	L	L	F	T	S	L	E	L	G	A	S	G	G	V	C	G	T	T	N	F	S	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T																			T	T		B	T	T	B							G	G	G							T	T							G	G	G	G	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Sequence	I	V	R	L	Y	H	E	Y	K	N	N	R	E	M	A	L	K	I	E	K	N	D	V	I	P	L	M	K	K	L	G	K	Y	Q	F	P	N	A	Y	Y	E	Y	F	Y	K	K	N	N	I	N	G	G	Y	R	P	P	M	Y	R	V	G	I	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T												T									T	T	S	S	T	T												T							T	T