Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ux8A_

Fold library idPDB HeaderMoleculeTitle
c4ux8A_PDB header: signaling proteinChain: A: PDB Molecule: proto-oncogene tyrosine-protein kinase receptor ret;PDBTitle: ret recognition of gdnf-gfralpha1 ligand by a composite binding site2 promotes membrane-proximal self-association


Added to library: Sat Oct 4 08:29:44 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LYFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQ
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
S
STTB
TT



SSTT





S
GGG


S
TTT
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence RSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPCQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFR
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) S
B
TSTTS


S



TTTSS



GGG

S
SS


 .........150.........160.........170.........180.........190.........200.........210
Sequence IRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTV
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) BTS



S

TTS
S
TTSS

TT

SS
B
TTT
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence HREEVVMVPFPVTVYDEDDSAPTFPAGVDTASAVVEFKRKEDTVVATLRVFDADVVPASGELVRRYTSTL
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)









TT



TT


S



SS
SSS



 .........290.........300.........310.........320.........330.........340.........350
Sequence LPGDTWAQQTFRVEHWPNETSVQANGSFVRATVHDYRLVLNRNLSISENRTMQLAVLVNDSLHLPSTYSL
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)
SS

S
TT

TTTS

SS


TT





S
SSS














 .........360.........370.........380.........390.........400.........410.........420
Sequence SVSRRARRFAQIGKVCVENCQAFSGINVQYKLHSSGANCSTLGVVTSAEDTSGILFVNDTKALRRPKCAE
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)
TT

SSS






BTTBBSSS
BS

SSSS


STT

TTT
S
 .........430.........440........
Sequence LHYMVVATDQQTSRQAQAQLLVTVEGSY
Predicted secondary structure






SS confidence



























Known secondary structure (DSSP) SSSS

S



S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D