PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4urtB_

Fold library id	PDB Header	Molecule	Title
c4urtB_	PDB header: protein binding	Chain: B: PDB Molecule: netrin receptor dcc;	PDBTitle: the crystal structure of a fragment of netrin-1 in complex2 with fn5-fn6 of dcc

Links to external resources
Added to library: Sat Sep 13 09:09:57 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M L P P V G V Q A V A L T H D A V R V S W A D N S V P K N Q K T S E V R L Y T V R W R T S F S A S A K Y K S E D T T S L S Y T A T G L K P N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
S S
S S
S
S S S
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T M Y E F S V M V T K N R R S S T W S M T A H A T T Y E A A P T S A P K D L T V I T R E G K P R A V I V S W Q P P L E A N G K I T A Y I L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
S S
S S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . .

Sequence Y T L D K N I P I D D W I M E T I S G D R L T H Q I M D L N L D T M Y Y F R I Q A R N S K G V G P L S D P I L F R T L K L E V L F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
S S S S
S S
S
T T
T T
G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	L	P	P	V	G	V	Q	A	V	A	L	T	H	D	A	V	R	V	S	W	A	D	N	S	V	P	K	N	Q	K	T	S	E	V	R	L	Y	T	V	R	W	R	T	S	F	S	A	S	A	K	Y	K	S	E	D	T	T	S	L	S	Y	T	A	T	G	L	K	P	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	S	S													S				S	S												S	S		S										S	S	S						S			S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	M	Y	E	F	S	V	M	V	T	K	N	R	R	S	S	T	W	S	M	T	A	H	A	T	T	Y	E	A	A	P	T	S	A	P	K	D	L	T	V	I	T	R	E	G	K	P	R	A	V	I	V	S	W	Q	P	P	L	E	A	N	G	K	I	T	A	Y	I	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T																			S	S											S	S		S	S										T	T			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence	Y	T	L	D	K	N	I	P	I	D	D	W	I	M	E	T	I	S	G	D	R	L	T	H	Q	I	M	D	L	N	L	D	T	M	Y	Y	F	R	I	Q	A	R	N	S	K	G	V	G	P	L	S	D	P	I	L	F	R	T	L	K	L	E	V	L	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		T	T	S		S	S	S	S							S	S		S									T	T												T	T																G	G	G	S