PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4uetA_

Fold library id	PDB Header	Molecule	Title
c4uetA_	PDB header: retinol-binding protein	Chain: A: PDB Molecule: nematode fatty acid retinoid binding protein;	PDBTitle: diversity in the structures and ligand binding sites among2 the fatty acid and retinol binding proteins of nematodes3 revealed by na-far-1 from necator americanus

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Added to library: Sat Sep 19 08:12:27 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M G S S H H H H H H S S G H M F K Y E D I P A D Y R D L M P P E A R D F L Q N L S D G D K T V L K E V F K A G P Y K N T E E S I A A L K K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
S S S S
G G G S
T T S
T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S P E L G A K V E K L H A M V K S K I A A L G P E A K G F A E K S I E I A R G I K A R Y Y T G N E P T K D D L K A S V K E V L K L Y K A M S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T S
T T T T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170

Sequence D A G K A D F G K Q F P F L A K V F E S G K A A K F A G E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	G	S	S	H	H	H	H	H	H	S	S	G	H	M	F	K	Y	E	D	I	P	A	D	Y	R	D	L	M	P	P	E	A	R	D	F	L	Q	N	L	S	D	G	D	K	T	V	L	K	E	V	F	K	A	G	P	Y	K	N	T	E	E	S	I	A	A	L	K	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	S				S	S	S	S					G	G	G	S						T	T	S		T																											S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	P	E	L	G	A	K	V	E	K	L	H	A	M	V	K	S	K	I	A	A	L	G	P	E	A	K	G	F	A	E	K	S	I	E	I	A	R	G	I	K	A	R	Y	Y	T	G	N	E	P	T	K	D	D	L	K	A	S	V	K	E	V	L	K	L	Y	K	A	M	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																				T	S																					T	T	T	T	T																				T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Sequence	D	A	G	K	A	D	F	G	K	Q	F	P	F	L	A	K	V	F	E	S	G	K	A	A	K	F	A	G	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	T	T					T