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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4uerb_

Fold library idPDB HeaderMoleculeTitle
c4uerb_PDB header: translationChain: B: PDB Molecule: us2;PDBTitle: 40s-eif1-eif1a-eif3-eif3j translation initiation complex from2 lachancea kluyveri


Added to library: Sat Feb 14 08:42:08 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LPLFSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKI
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........80.........90.........100.........110.........120.........130.........140
Sequence IKSFHGKRLDLKHRLFLYTMKDPSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWS
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Known secondary structure (DSSP) ----------------------
TGGGG
TT



SS

SS

TT
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TNYVRFSPKGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSP
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Known secondary structure (DSSP) SS

TTSS

SSTTTT
TT
TTS
SS




TT
TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence FTKKNEGHQLCIWDIASGLLMATFPVIKSPYLKWPLVRWSYNDKYCARMVGDSLIVHDATKNFMPLEAKA
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Known secondary structure (DSSP)

GGGTT

TTT






TT

S
SS
TTSSTTGGGTT


GG
 .........290.........300.........310.........320.........330.........340.........350
Sequence LKPSGIRDFSFAPEGVKLQPFRNGDEPSVLLAYWTPETNNSACTATIAEVPRGRVLKTVNLVQVSNVTLH
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Known secondary structure (DSSP) GS
BS


SS
B

SS

SSS

B


SSS

TT



S
 .........360.........370.........380.........390.........400.........410.........420
Sequence WQNQAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPVEKVELKDSVFEFGWEPHGNRFVTISVHEVADM
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Known secondary structure (DSSP)
TTSS
TTSS
TTSTT


SS
TTSS



SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence NYAIPANTIRFYAPETKEKTDVIKRWSLVKEIPKTFANTVSWSPAGRFVVVGALVGPNMRRSDLQFYDMD
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Known secondary structure (DSSP)
TTS


STTSS

B



TTSS

BTTBSS
TB
 .........500.........510.........520.........530.........540.........550.........560
Sequence YPGEKNINDNNDVSASLKDVAHPTYSAATNITWDPSGRYVTAWSSSLKHKVEHGYKIFNIAGNLVKEDII
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Known secondary structure (DSSP)

SS



S
SSSS
B







S
TTSS

TTTSSS


TT


 .........570..
Sequence AGFKNFAWRPRP
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Known secondary structure (DSSP) TT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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