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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4u7aA_

Fold library idPDB HeaderMoleculeTitle
c4u7aA_PDB header: protein bindingChain: A: PDB Molecule: ribosome biogenesis protein erb1;PDBTitle: the carboxy-terminal domain of erb1 is a seven-bladed beta-propeller2 that binds rna.


Added to library: Sat May 2 08:45:44 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LPSPKDLRPFPIRCSTIYAGHKGKVRTLSIDPSGLWLATGSDDGTVRVWEILTGREVYRTTLIDDEENPD
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Known secondary structure (DSSP)


GGGG







SS

TTS
TTSTTT



S
TT
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence YHIECIEWNPDANNGILAVAVGENIHLIVPPIFGYDIENNGKTKIEDGFQVAQWNKPSQKQLEKDICITI
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Known secondary structure (DSSP)


SSTTS

TT

TTS
T





TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence SCKKTVKKLSWHRKGDYFVTVQPDSGNTSVLIHQVSKHLTQSPFKKSKGIIMDAKFHPFKPQLFVCSQRY
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Known secondary structure (DSSP) SS



TTSS
TT
GGGSGGGT


SS

S

SSSSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VRIYDLSQQILVKKLLPGARWLSKIDIHPRGDNLIASSFDKRVLWHDLDLASTPYKTLRYHEKAVRSVNF
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Known secondary structure (DSSP) TTTT



S

TTSSTTS
TTT
SS
S


SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence HKKLPLFSSAADDGTIHVFHATVYDDMMKNPMIVPLKKLTGHKVINSLGVLDAIWHPREAWLFSAGADNT
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Known secondary structure (DSSP)
SSSSTTS


SSSS







BTTB

SSSS
TTS
 ......
Sequence ARLWTT
Predicted secondary structure
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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