PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4u5yA_

Fold library id	PDB Header	Molecule	Title
c4u5yA_	PDB header: ligase	Chain: A: PDB Molecule: acyl-coa synthetase;	PDBTitle: crystal structure of the complex between the gnat domain of s.2 lividans pat and the acetyl-coa synthetase c-terminal domain of s.3 enterica

Links to external resources
Added to library: Sat Nov 22 09:10:36 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y P A H W E A D V V L R D G G T A R V R P I T V D D A E R L V S F Y E Q V S D E S K Y Y R F F A P Y P R L C A K D V H R F T H H D F V D R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
T T S
G G G T S
S S
S
T T
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G L A A T I G G E F I A T V R Y D R I A D E A E V A F L V Q D A H Q G R G V A S A L L E H I A A V A R E R G I R R F A A E V L P A N N K M I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G T T S S T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . .

Sequence K V F M D A G Y T Q K R S F E D G V V R L E F D L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	P	A	H	W	E	A	D	V	V	L	R	D	G	G	T	A	R	V	R	P	I	T	V	D	D	A	E	R	L	V	S	F	Y	E	Q	V	S	D	E	S	K	Y	Y	R	F	F	A	P	Y	P	R	L	C	A	K	D	V	H	R	F	T	H	H	D	F	V	D	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	S						T	T	S										G	G	G										T	S										S	S				S									T	T				S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	L	A	A	T	I	G	G	E	F	I	A	T	V	R	Y	D	R	I	A	D	E	A	E	V	A	F	L	V	Q	D	A	H	Q	G	R	G	V	A	S	A	L	L	E	H	I	A	A	V	A	R	E	R	G	I	R	R	F	A	A	E	V	L	P	A	N	N	K	M	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T																							G	G	G	T	T	S	S																T	T										T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Sequence	K	V	F	M	D	A	G	Y	T	Q	K	R	S	F	E	D	G	V	V	R	L	E	F	D	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T								T	T	S