PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4u4hA_

Fold library id	PDB Header	Molecule	Title
c4u4hA_	PDB header: viral protein	Chain: A: PDB Molecule: tegument protein ul21;	PDBTitle: crystal structure of hsv-1 ul21 n-terminal domain

Links to external resources
Added to library: Sat Jan 10 08:03:44 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M W S H P Q F E K G S M E L S Y A T T M H Y R D V V F Y V T T D R N R A Y F V C G G C V Y S V G R P C P G E I A K F G L V V R G T G P D D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S
S T T
T T S S T T
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V V A N Y V R S E L R Q R G L D E V F L D S V C L L N P N V S S E L D V I N T N D V E V L D E C L A E Y C T S L R T S P G V L I S G L R V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S T T
S S G G G G B T
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . .

Sequence A Q D R I I E L F E H P T I V N V S S H F V Y T P S P Y V F A L A Q A H L P R L P S S L E A L V S G L F D G I P A P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T T
T T T S S
T T G G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	W	S	H	P	Q	F	E	K	G	S	M	E	L	S	Y	A	T	T	M	H	Y	R	D	V	V	F	Y	V	T	T	D	R	N	R	A	Y	F	V	C	G	G	C	V	Y	S	V	G	R	P	C	P	G	E	I	A	K	F	G	L	V	V	R	G	T	G	P	D	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G	G	S								S						T	T							T	T	S	S							T	T																							S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	V	A	N	Y	V	R	S	E	L	R	Q	R	G	L	D	E	V	F	L	D	S	V	C	L	L	N	P	N	V	S	S	E	L	D	V	I	N	T	N	D	V	E	V	L	D	E	C	L	A	E	Y	C	T	S	L	R	T	S	P	G	V	L	I	S	G	L	R	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T											T	T	S	T	T		S	S	G	G	G	G	B	T																	S	S				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Sequence	A	Q	D	R	I	I	E	L	F	E	H	P	T	I	V	N	V	S	S	H	F	V	Y	T	P	S	P	Y	V	F	A	L	A	Q	A	H	L	P	R	L	P	S	S	L	E	A	L	V	S	G	L	F	D	G	I	P	A	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T													T	T	T								T	T	T									S	S										T	T	G	G	G	G	S