PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4u2nA_

Fold library id	PDB Header	Molecule	Title
c4u2nA_	PDB header: transcription	Chain: A: PDB Molecule: zinc finger and btb domain-containing protein 17,nucleus	PDBTitle: crystal structure of a complex of the miz1- and nac1 poz domains.

Links to external resources
Added to library: Sat Dec 13 12:05:03 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S D F P Q H S Q H V L E Q L N Q Q R Q L G L L C D C T F V V D G V H F K A H K A V L A A C S E Y F K M L F V D K D V V H L D I S N A A G L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T T T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q V L E F M Y T A K L S L S P E N V D D V L A V A T F L Q M Q D I I T A C H A L K S L A Q T L Q M E I P N F G N S I L E C L N E Q R L Q G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T T
T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y C D V S V V V K G H A F K A H R A V L A A S S S Y F R D L F N N S R S A V V E L P A A V Q P Q S F Q Q I L S F C Y T G R L S D Q D L L M Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S
T T
S B

. . . . . . . . . 220 . . . . . . . . . 230

Sequence T A G F L Q I Q E I M E K G T E F F L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	D	F	P	Q	H	S	Q	H	V	L	E	Q	L	N	Q	Q	R	Q	L	G	L	L	C	D	C	T	F	V	V	D	G	V	H	F	K	A	H	K	A	V	L	A	A	C	S	E	Y	F	K	M	L	F	V	D	K	D	V	V	H	L	D	I	S	N	A	A	G	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B		T	T															T	T	T	T								T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	V	L	E	F	M	Y	T	A	K	L	S	L	S	P	E	N	V	D	D	V	L	A	V	A	T	F	L	Q	M	Q	D	I	I	T	A	C	H	A	L	K	S	L	A	Q	T	L	Q	M	E	I	P	N	F	G	N	S	I	L	E	C	L	N	E	Q	R	L	Q	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S						T	T	T											T	T																							T	T															T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	C	D	V	S	V	V	V	K	G	H	A	F	K	A	H	R	A	V	L	A	A	S	S	S	Y	F	R	D	L	F	N	N	S	R	S	A	V	V	E	L	P	A	A	V	Q	P	Q	S	F	Q	Q	I	L	S	F	C	Y	T	G	R	L	S	D	Q	D	L	L	M	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T								T	T																											S						T	T																S	B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	T	A	G	F	L	Q	I	Q	E	I	M	E	K	G	T	E	F	F	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T		G	G	G	G