PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4u2mA_

Fold library id	PDB Header	Molecule	Title
c4u2mA_	PDB header: transcription	Chain: A: PDB Molecule: zinc finger and btb domain-containing protein 17,b-cell	PDBTitle: crystal structure of a complex of the miz1- and bcl6 poz domains.

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Added to library: Sat Dec 13 12:07:55 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D F P Q H S Q H V L E Q L N Q Q R Q L G L L C D C T F V G V H F K A H K A V L A A C S E Y F K M L F V D Q N A A G L G Q V L E F M Y T A K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S L S P E N V D D V L A V A T F L Q M Q D I I T A C H A L K S L A G T A D S C I Q F T R H A S D V L L N L N R L R S R D I L T D V V I V V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
T
T T T T
S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R E Q F R A H K T V L M A C S G L F Y S I F T D Q L K C N L S V I N L D P E I N P E G F C I L L D F M Y T S R L N L R E G N I M A V M A T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
T T T T T
S
T T S
S
T T T

. . . . . . . . . 220 . . . . . . . .

Sequence M Y L Q M E H V V D T C R K F I K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	F	P	Q	H	S	Q	H	V	L	E	Q	L	N	Q	Q	R	Q	L	G	L	L	C	D	C	T	F	V	G	V	H	F	K	A	H	K	A	V	L	A	A	C	S	E	Y	F	K	M	L	F	V	D	Q	N	A	A	G	L	G	Q	V	L	E	F	M	Y	T	A	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T																T	T	T																																		T	T											S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	L	S	P	E	N	V	D	D	V	L	A	V	A	T	F	L	Q	M	Q	D	I	I	T	A	C	H	A	L	K	S	L	A	G	T	A	D	S	C	I	Q	F	T	R	H	A	S	D	V	L	L	N	L	N	R	L	R	S	R	D	I	L	T	D	V	V	I	V	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T											T	T														T											T	T															T	T		S								T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	E	Q	F	R	A	H	K	T	V	L	M	A	C	S	G	L	F	Y	S	I	F	T	D	Q	L	K	C	N	L	S	V	I	N	L	D	P	E	I	N	P	E	G	F	C	I	L	L	D	F	M	Y	T	S	R	L	N	L	R	E	G	N	I	M	A	V	M	A	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																						T		T	T	T	T	T		S						T	T	S															S						T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Sequence	M	Y	L	Q	M	E	H	V	V	D	T	C	R	K	F	I	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T													T