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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4u1fA_

Fold library idPDB HeaderMoleculeTitle
c4u1fA_PDB header: translationChain: A: PDB Molecule: eukaryotic translation initiation factor 3 subunit b;PDBTitle: crystal structure of middle domain of eukaryotic translation2 initiation factor eif3b


Added to library: Sat Sep 13 08:47:52 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSPKGTYLFSYHQQGVT
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Known secondary structure (DSSP)
TGGGG
TT



SS

SS

TT
SSSSS

TTSS

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence AWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASGLLMA
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Known secondary structure (DSSP) TTTT
TT
TTS
SS




TT
TT



GGGTT

TTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence TFPVIKSPYLKWPLVRWSYNDKYCARMVGDSLIVHDATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFR
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Known secondary structure (DSSP)




TT

S
SS
TTSSTTGGGTT


GGGS
BS


SS
B

SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence NGDEPSVLLAYWTPETNNSACTATIAEVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGKTQ
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Known secondary structure (DSSP) SSS

B


SSS

TT



S
TTSS
TTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence FSNLQICRLTERDIPVEKVELKDSVFEFGWEPHGNRFVTISVHEVADMNYAIPANTIRFYAPETKKRWSL
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Known secondary structure (DSSP) TTSTT


SS
TTSS



SS

TTS

B



 .........360.........370.........380.........390.........400.........410.........420
Sequence VKEIPKTFANTVSWSPAGRFVVVGALVGPNMRRSDLQFYDMDYPGEKNINDNNDVSASLKDVAHPTYSAA
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Known secondary structure (DSSP)



TTSS

BTTBSS
TB

SS



S
SSBS
B







 .........430.........440.........450.........460.........470....
Sequence TNITWDPSGRYVTAWSSSLKHKVEHGYKIFNIAGNLVKEDIIAGFKNFAWRPRP
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Known secondary structure (DSSP) S
TTSS


TTTS




TT


TT










Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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