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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4txaA_

Fold library idPDB HeaderMoleculeTitle
c4txaA_PDB header: rna binding proteinChain: A: PDB Molecule: roquin-1;PDBTitle: crystal structure of n-terminus of roquin


Added to library: Sat Mar 14 09:11:25 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTDIELLPVNSALLQLVG
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Known secondary structure (DSSP)

TT

SB
TTT
SB

SSSS

TTS

SSS
TTT



SSTTTT



TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LCSGVEDTKHYEEAKKCVEELALYLKPVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELI
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Known secondary structure (DSSP)

S
GGG




T

TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LQHQNPQQLSSNLWAAVRARGCQFLGPARQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
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Known secondary structure (DSSP) TTSS
SSSTTT




TT


B




SS


 .........220.........230.........240.........250.........260.........270.........280
Sequence SIGHVVQLLYRASCFKVTKRDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQS
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Known secondary structure (DSSP) TT




GGGSSTT



SSST
 .........290.........300.........310.........320.........330.........340.........350
Sequence HKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELLANIDPSPDAPPPTWEQLENGLV
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Known secondary structure (DSSP) TT

TTS

TT
GGGGTS

STT




 .........360.......
Sequence AVRTVVHGLVDYIQNHS
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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