PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4twkB_

Fold library id	PDB Header	Molecule	Title
c4twkB_	PDB header: transport protein	Chain: B: PDB Molecule: potassium channel subfamily k member 2;	PDBTitle: crystal structure of human two pore domain potassium ion channel trek12 (k2p2.1)

Links to external resources
Added to library: Sat Aug 9 08:26:53 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K W K T V S T I F L V V V L Y L I I G A T V F K A L E Q P H E I S Q R T T I V I Q K Q T F I S Q H S C V N S T E L D E L I Q Q I V A A I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A G I I P I S H W D L G S S F F F A G T V I T T I G F G N I S P R T E G G K I F C I I Y A L L G I P L F G F L L A G V G D Q L G T I F G K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S T T
S S
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I A K V E D T F I K W N V S Q T K I R I I S T I I F I L F G C V L F V A L P A I I F K H I E G W S A L D A I Y F V V I T L T T I G F G D Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 .

Sequence P V V W F W I L V G L A Y F A A V L S M I G D W L R V I S A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	W	K	T	V	S	T	I	F	L	V	V	V	L	Y	L	I	I	G	A	T	V	F	K	A	L	E	Q	P	H	E	I	S	Q	R	T	T	I	V	I	Q	K	Q	T	F	I	S	Q	H	S	C	V	N	S	T	E	L	D	E	L	I	Q	Q	I	V	A	A	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																			T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	G	I	I	P	I	S	H	W	D	L	G	S	S	F	F	F	A	G	T	V	I	T	T	I	G	F	G	N	I	S	P	R	T	E	G	G	K	I	F	C	I	I	Y	A	L	L	G	I	P	L	F	G	F	L	L	A	G	V	G	D	Q	L	G	T	I	F	G	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T						S	S	S													T	T				S	S		S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	A	K	V	E	D	T	F	I	K	W	N	V	S	Q	T	K	I	R	I	I	S	T	I	I	F	I	L	F	G	C	V	L	F	V	A	L	P	A	I	I	F	K	H	I	E	G	W	S	A	L	D	A	I	Y	F	V	V	I	T	L	T	T	I	G	F	G	D	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T																							T										T	T																T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Sequence	P	V	V	W	F	W	I	L	V	G	L	A	Y	F	A	A	V	L	S	M	I	G	D	W	L	R	V	I	S	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)