Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4tqvO_

Fold library idPDB HeaderMoleculeTitle
c4tqvO_PDB header: transport proteinChain: O: PDB Molecule: algs;PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate


Added to library: Sat Jul 25 10:00:01 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MVASVSIQNVVKRYDKTTVVHGVSLDIEPGEFVVLVGPSGCGKSTTLRMVAGLEEISGGTIRIDGRVIND
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP)



SSS

TT

SSSSTTSS


TT
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LAPKDRDVAMVFQNYALYPHLNVRDNISFGLRLKRTKKSVIDAAVKTAADILGLQPLLERKPSDLSGGQR
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) S
TTTTT
SS

S
SSS
SS


TTT
STTTT

GGGS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QRVAMGRAIVRDPKVFLFDQPLSNLDAKLRTQMRAEIKRLHQRLGTTVIYVTHDQVEAMTLADRIVVMRD
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TT

SSTTTTS
S

S

S
ST
 .........220.........230.........240.........250.........260.........270.........280
Sequence GLIEQIGKPMDLFLHPANTFVASFIGSPPMNLMPARIAVDSTQHVELNGGNRISLLPRAGTHLAPGQEVV
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) TS


S
SBSSSS


TT
SSSTTT



TT



TT

 .........290.........300.........310.........320.........330.........340.........350
Sequence FGIRPEDVTLDGVEGSERAQIKATVDIVEPLGSESILHATVGDHSLVVKVGGLNEVHPGDPVTLHVDLTR
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
GGG
GGGTS
TT



SS
SSSS
TT

TTS

SSS
 .........360...
Sequence VHLFDAQSQASIY
Predicted secondary structure






SS confidence












Known secondary structure (DSSP)
SSS
BB


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D