PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4s1kA_

Fold library id	PDB Header	Molecule	Title
c4s1kA_	PDB header: viral protein	Chain: A: PDB Molecule: polyhedrin;	PDBTitle: structure of uranotaenia sapphirina cypovirus (cpv17) polyhedrin at2 100 k

Links to external resources
Added to library: Sat Mar 28 08:14:11 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A D L S L A R Q R L T D E S V N E A P R A Y D A N M E L V I V A E Y P E G Q C K S F H F A N P F V I K G V I K S S E L M W D I D N G H Q M S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S T T
T T S
S S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E Y E L Q R S I N G Y A A S H S N M R Q R S A I N R I P K K L S F Y L R G N V D W N K A S I D I R G P T G L S M R Q T E E Y S L D R I R P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
S
S S
G G G S
S S S B
T T T
T T S S
S S
G G G
S S
G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence C S Y K R N K F V D L P S C G G R C E K A W Y V E L D G R P V S I A V I V P R N M H N G I N L Y A G P L L G N V I E G L D T V P E C T Q W F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G B
G G G S
T T
S
S S
B
T T S
T T S T T T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . .

Sequence D N A P E L Y A Y H A S N Y G M T M L D Q F S V I H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T
B
T T S
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	D	L	S	L	A	R	Q	R	L	T	D	E	S	V	N	E	A	P	R	A	Y	D	A	N	M	E	L	V	I	V	A	E	Y	P	E	G	Q	C	K	S	F	H	F	A	N	P	F	V	I	K	G	V	I	K	S	S	E	L	M	W	D	I	D	N	G	H	Q	M	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		G	G	G	S	T	T												T	T	S										S	S												S					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	Y	E	L	Q	R	S	I	N	G	Y	A	A	S	H	S	N	M	R	Q	R	S	A	I	N	R	I	P	K	K	L	S	F	Y	L	R	G	N	V	D	W	N	K	A	S	I	D	I	R	G	P	T	G	L	S	M	R	Q	T	E	E	Y	S	L	D	R	I	R	P	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	T	T		S			S	S			G	G	G	S		S								S	S	B		T	T	T								T	T	S	S				S	S			G	G	G			S	S		G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	C	S	Y	K	R	N	K	F	V	D	L	P	S	C	G	G	R	C	E	K	A	W	Y	V	E	L	D	G	R	P	V	S	I	A	V	I	V	P	R	N	M	H	N	G	I	N	L	Y	A	G	P	L	L	G	N	V	I	E	G	L	D	T	V	P	E	C	T	Q	W	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	B		G	G	G	S						T	T		S											S	S										B			T	T	S			T	T	S	T	T									T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Sequence	D	N	A	P	E	L	Y	A	Y	H	A	S	N	Y	G	M	T	M	L	D	Q	F	S	V	I	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S								T					T				B		T	T	S		B