PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4s05B_

Fold library id	PDB Header	Molecule	Title
c4s05B_	PDB header: transcription/dna	Chain: B: PDB Molecule: dna-binding transcriptional regulator basr;	PDBTitle: crystal structure of klebsiella pneumoniae pmra in complex with pmra2 box dna

Links to external resources
Added to library: Sat Nov 14 09:31:01 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K I L V I E D D A L L L Q G L I L A M Q S E G Y V C D G V S T A H E A A L S L A S N H Y S L I V L D L G L P D E D G L H F L S R M R R E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S
S
S
S
S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M T Q P V L I L T A R D T L E D R I S G L D T G A D D Y L V K P F A L E E L N A R I R A L L R R H N N Q G D N E I S V G N L R L N V T R R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S S
T T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V W L G E T A L D L T P K E Y A L L S R L M M K A G S P V H R E I L Y N D I Y S G D N E P A T N T L E V H I H N L R E K I G K S R I R T V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S B
T T T S
B
T T
G G G
S S S S T S S S
S

. . . . . . . . .

Sequence G F G Y M L A N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	I	L	V	I	E	D	D	A	L	L	L	Q	G	L	I	L	A	M	Q	S	E	G	Y	V	C	D	G	V	S	T	A	H	E	A	A	L	S	L	A	S	N	H	Y	S	L	I	V	L	D	L	G	L	P	D	E	D	G	L	H	F	L	S	R	M	R	R	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S														T	T							S												S			S						S			S	S	S												T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	T	Q	P	V	L	I	L	T	A	R	D	T	L	E	D	R	I	S	G	L	D	T	G	A	D	D	Y	L	V	K	P	F	A	L	E	E	L	N	A	R	I	R	A	L	L	R	R	H	N	N	Q	G	D	N	E	I	S	V	G	N	L	R	L	N	V	T	R	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S													T	T		S					S	S																												T	T					T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	W	L	G	E	T	A	L	D	L	T	P	K	E	Y	A	L	L	S	R	L	M	M	K	A	G	S	P	V	H	R	E	I	L	Y	N	D	I	Y	S	G	D	N	E	P	A	T	N	T	L	E	V	H	I	H	N	L	R	E	K	I	G	K	S	R	I	R	T	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S	B																	T	T	T	S		B								T	T			G	G	G			S	S	S	S										T	S	S	S								S
	.	.	.	.	.	.	.	.	.
Sequence	G	F	G	Y	M	L	A	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S