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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4rzlA_

Fold library idPDB HeaderMoleculeTitle
c4rzlA_PDB header: dna binding proteinChain: A: PDB Molecule: restriction endonuclease lpnpi;PDBTitle: dna recognition domain of the cytosine modification-dependent2 restriction endonuclease lpnpi


Added to library: Sat Jun 13 08:24:53 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HHHGKIYSFDTLANADLIIDAVYEGGSSGNASDDPISKIIKGIGNMGGFRSAGQGIFKKLIVLYTNMEDG
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Known secondary structure (DSSP)





GGGGGG

TT



SSSSGGG
STTS
SS
SSSSSS
S



T
 .........80.........90.........100.........110.........120.........130.........140
Sequence DWPDSIDTSKGQFIYYGDNKHPGHDIHDTPRQGNATLKMLFDSTHNEKDARRIVPPIFIFVKYPTASSSR
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Known secondary structure (DSSP) TS

TTTT
S

SSSS
TT

TT
T
SSSTTTT




BTTBTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence SVQFKGVAVPGYPGLSATDDLIAVWKTTNGQRFQNYRAIFTILNIPMVSRKWINSLFDPFGQDNSLNPFY
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Known secondary structure (DSSP)
S
TT

TTTSTTBS
S
TTT
GGG

GGG
 .........220.......
Sequence QWKISGKADVLIAPSTK
Predicted secondary structure








SS confidence
















Known secondary structure (DSSP) S


B







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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