Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ryaA_

Fold library idPDB HeaderMoleculeTitle
c4ryaA_PDB header: transport proteinChain: A: PDB Molecule: abc transporter substrate binding protein (sorbitol);PDBTitle: crystal structure of abc transporter solute binding protein avi_35672 from agrobacterium vitis s4, target efi-510645, with bound d-mannitol


Added to library: Sat Dec 27 09:46:34 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AETLTIATVNNGDMIRMQKLTDDFTKKNPGIDVKWVTLEENVLRQKVTTDVATKGGQYDVMTIGIYEAPI
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP)


TTTSTT
TT



STT
 .........80.........90.........100.........110.........120.........130.........140
Sequence WGKQGWLAPLDKLSADKDYDAADLLPPVRSGLTVDGKLYAAPFYAESSMVMYRKDLFEKAGLKMPEAPTW
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) T
B



TTT
GGGB
TTTT


T



SS
B
 .........150.........160.........170.........180.........190.........200.........210
Sequence DFIKEAADKITDKSKEVYGICLRGKAGWGENIAFLSAMSNSFGARWFDEQWKPQFDQPEWKKTLQFYVDL
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)
BGGGTBBS
B


S
STTTTT

SB
TT

B
TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence MKKNGPPGASSNGFNENLALFQTGKCGMWIDATVAASFVTNPKESKVADQVGFALAPDNGLGKRGNWLWS
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) S
TTGGG

TT
BSTTT
TTT
TTGGG

B
SSS





 .........290.........300.........310.........320.........330.........340.........350
Sequence WNLAIPAGSKKVEAAEKFIAWATSKDYLKLVAEKDGWANVPPGTRTSLYANADYQKAAPFAKMTLDSINS
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)
BTT
S
TS
GGGS

SSBT

TT
 .........360.........370.........380.........390.........400.........410.......
Sequence ADPKHPTVKPVPYEGVQYVAIPEFQGIGTAVGQQFSAALAGQTTVDQALKTAQTLTEREMKKAGYPK
Predicted secondary structure






















SS confidence


































































Known secondary structure (DSSP)

SSS
SSS

SS

SSS

STTTTSS
TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D