PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ry9A_

Fold library id	PDB Header	Molecule	Title
c4ry9A_	PDB header: transport protein	Chain: A: PDB Molecule: periplasmic binding protein/laci transcriptional regulator;	PDBTitle: crystal structure of carbohydrate transporter solute binding protein2 veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009,3 a complex with d-talitol

Links to external resources
Added to library: Sat Dec 27 09:58:31 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G A F K I G V S M K T L S A P Y F A A Q M E A A K A R G K E L G Y E V L A T D A Q G K L Q K Q I S D V E D L V T R G V K L L I I N P A D S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T
T T
T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G L V N A V N N A S A N G V K V V V I D S T L N P R A N F V T Q V Q S S N S I N G A L V G H W V I E E V G N K S L K I A L L S G E K G N P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S S
T T S
S
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G Q E R R L G V L S G I I E A Q L R K F G K A D L T V V G Q G W G H W N D E G G L K A M E D L L V A N K D I N M V L G E N D S M V L G A R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A I E S A G R T G I L L V A A A D A Q K E A L A L I K Q G K Y G V T G L N D P A L V A R T A I D L G V K V V K G E V K D V P K Q T L T T P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S B
T T S S
B B
T S
S
S

. . . . . . . . . 290 . . . . . . .

Sequence A I T K G N V D K F Y N P K A V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	A	F	K	I	G	V	S	M	K	T	L	S	A	P	Y	F	A	A	Q	M	E	A	A	K	A	R	G	K	E	L	G	Y	E	V	L	A	T	D	A	Q	G	K	L	Q	K	Q	I	S	D	V	E	D	L	V	T	R	G	V	K	L	L	I	I	N	P	A	D	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S				S																	T	T									T	T															T	T									S		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	L	V	N	A	V	N	N	A	S	A	N	G	V	K	V	V	V	I	D	S	T	L	N	P	R	A	N	F	V	T	Q	V	Q	S	S	N	S	I	N	G	A	L	V	G	H	W	V	I	E	E	V	G	N	K	S	L	K	I	A	L	L	S	G	E	K	G	N	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T										T	T							S	S				T	T	S			S																							T	T												T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	Q	E	R	R	L	G	V	L	S	G	I	I	E	A	Q	L	R	K	F	G	K	A	D	L	T	V	V	G	Q	G	W	G	H	W	N	D	E	G	G	L	K	A	M	E	D	L	L	V	A	N	K	D	I	N	M	V	L	G	E	N	D	S	M	V	L	G	A	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S													T	T	S																S								S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	I	E	S	A	G	R	T	G	I	L	L	V	A	A	A	D	A	Q	K	E	A	L	A	L	I	K	Q	G	K	Y	G	V	T	G	L	N	D	P	A	L	V	A	R	T	A	I	D	L	G	V	K	V	V	K	G	E	V	K	D	V	P	K	Q	T	L	T	T	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T									S	S	B											T	T	S	S		B			B																				T	S			S			S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Sequence	A	I	T	K	G	N	V	D	K	F	Y	N	P	K	A	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T							T	T