PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4rxmA_

Fold library id	PDB Header	Molecule	Title
c4rxmA_	PDB header: transport protein	Chain: A: PDB Molecule: possible sugar abc superfamily atp binding cassette	PDBTitle: crystal structure of periplasmic abc transporter solute binding2 protein a7jw62 from mannheimia haemolytica phl213, target efi-511105,3 in complex with myo-inositol

Links to external resources
Added to library: Sat Dec 27 10:50:28 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S M K D E L V V F S L P N L S S P F E V Q L Q K V A V E T S K K L E I K L Q V L D G Q S S S T K Q A S D L E N A I T R G A K G I I I S P N D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S T
T T
T T
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V N A I S G A V E E I I K E K I P A A T L D R K V E S S K P V P H F G A N N Y T G G Q E V A K A V K A K Y P N G A K I I L L T G Q P G S T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T
S S
S S
S T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N I E R T K G I R D E L A A G G D K Y K I V V D Q T G N W L R S E G L R I I E S V L P T L K E K P E V I I S A N D D M A L G A I E A L R S Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
G G G
S S
S S S T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G L K A G D I L V T G F D S T P E A L A R V K D G W L Y L T A D Q R P S F A V S T A L E Q V V G N I R E S K E V S G A D Y P P K I I L K D N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S S
S
T T S
B
G G G

. . . . . . . . . 290 .

Sequence L Q E A E R F A E I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S T T G G G

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	M	K	D	E	L	V	V	F	S	L	P	N	L	S	S	P	F	E	V	Q	L	Q	K	V	A	V	E	T	S	K	K	L	E	I	K	L	Q	V	L	D	G	Q	S	S	S	T	K	Q	A	S	D	L	E	N	A	I	T	R	G	A	K	G	I	I	I	S	P	N	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S		S	S	S																		T									T	T															T	T		S							S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	N	A	I	S	G	A	V	E	E	I	I	K	E	K	I	P	A	A	T	L	D	R	K	V	E	S	S	K	P	V	P	H	F	G	A	N	N	Y	T	G	G	Q	E	V	A	K	A	V	K	A	K	Y	P	N	G	A	K	I	I	L	L	T	G	Q	P	G	S	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T										T	T							S	S					S	S																								S	T	T											T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	I	E	R	T	K	G	I	R	D	E	L	A	A	G	G	D	K	Y	K	I	V	V	D	Q	T	G	N	W	L	R	S	E	G	L	R	I	I	E	S	V	L	P	T	L	K	E	K	P	E	V	I	I	S	A	N	D	D	M	A	L	G	A	I	E	A	L	R	S	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T										T	T													G	G	G		S	S			S					S	S														T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	L	K	A	G	D	I	L	V	T	G	F	D	S	T	P	E	A	L	A	R	V	K	D	G	W	L	Y	L	T	A	D	Q	R	P	S	F	A	V	S	T	A	L	E	Q	V	V	G	N	I	R	E	S	K	E	V	S	G	A	D	Y	P	P	K	I	I	L	K	D	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			T	T	S	S						S											T	T	S			B																																							G	G	G
	.	.	.	.	.	.	.	.	.	290	.
Sequence	L	Q	E	A	E	R	F	A	E	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	S	T	T	G	G	G