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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4rpbB_

Fold library idPDB HeaderMoleculeTitle
c4rpbB_1.61PDB header: viral proteinChain: B: PDB Molecule: capsid protein vp1;


Added to library: Sat Jun 25 08:18:18 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTTQLQVSGICAFKGEVTAHL
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Known secondary structure (DSSP)








GGG
B
SSSSSB



TT


B

SSS
B
TTS
B
TT

S
GGGTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence TLYNITITNLNGSPFDPSEDIPAPLGVPDFQGRVFGVITQRDKQNAAGQSQPANRGHDAVVPTYTAQYTP
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Known secondary structure (DSSP)
B
TTS
B

TTSSSSSSTT


SBS
SS

TT
SS

SSSTT
BG
 .........150.........160.........170.........180.........190.........200.........210
Sequence KLGQVQIGTDLKVNQPVKFTPVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYLPL
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Known secondary structure (DSSP) GGT



TTSS
STT
BTTS


TT
TTS


S



B


STT

B
 .........220.........230.........240.........250.........260.........270.........280
Sequence KGGYGNPAIDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAPVVVP
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Known secondary structure (DSSP) SSSS


SS




SSSTTTTTTT
S

S


 .........290.........300
Sequence ANGYFRFDSWVNQFYSLAPM
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Known secondary structure (DSSP) TT

TT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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