PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4rndC_

Fold library id	PDB Header	Molecule	Title
c4rndC_	PDB header: hydrolase	Chain: C: PDB Molecule: v-type proton atpase subunit d;	PDBTitle: crystal structure of the subunit df-assembly of the eukaryotic v-2 atpase.

Links to external resources
Added to library: Sat Dec 13 11:38:37 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E A L T K R F R D I T K R I D D A K Q K M G R V M Q T A A F S L A E V S Y A T G E N I G Y Q V Q E S V S T A R F K V R A R Q E N V S G V Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S Q F E S Y I D P E I N D F R L T G L G R G G Q Q V Q R A K E I Y S R A V E T L V E L A S L Q T A F I I L D E V I K V T N R R V N A I E H V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . .

Sequence I I P R T E N T I A Y I N S E L D E L D R E E F Y R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	A	L	T	K	R	F	R	D	I	T	K	R	I	D	D	A	K	Q	K	M	G	R	V	M	Q	T	A	A	F	S	L	A	E	V	S	Y	A	T	G	E	N	I	G	Y	Q	V	Q	E	S	V	S	T	A	R	F	K	V	R	A	R	Q	E	N	V	S	G	V	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																		T			S		S											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	Q	F	E	S	Y	I	D	P	E	I	N	D	F	R	L	T	G	L	G	R	G	G	Q	Q	V	Q	R	A	K	E	I	Y	S	R	A	V	E	T	L	V	E	L	A	S	L	Q	T	A	F	I	I	L	D	E	V	I	K	V	T	N	R	R	V	N	A	I	E	H	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S	S							S		T	T																																																	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Sequence	I	I	P	R	T	E	N	T	I	A	Y	I	N	S	E	L	D	E	L	D	R	E	E	F	Y	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T	T