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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4rkiA_

Fold library idPDB HeaderMoleculeTitle
c4rkiA_2.05PDB header: transferaseChain: A: PDB Molecule: dna polymerase iii subunit beta;


Added to library: Sat Jan 16 08:30:04 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQSSDKEGVGTI
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Known secondary structure (DSSP)

TTS

S
TTSGGGTT
SS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence NGKKFLDIISCLKDSNIILETKDDSLAIKQNKSSFKLPMFDADEFPEFPVIDPKVSIEVNAPFLVDAFKK
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Known secondary structure (DSSP) TS
SS

SSTT


GGGS







S
ST
 .........150.........160.........170.........180.........190.........200.........210
Sequence IAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTKRLSYTQLEKISIHSTEEDISCILPKRALLEILKL
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Known secondary structure (DSSP) GGG

TT
SSTGGGTTTT
SS
S


SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence FYENFSFKSDGMLAVIENEMHTFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSSTIKL
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Known secondary structure (DSSP)
SSS
SS
SS


S



S
S

S
TTS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence TLEKNNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFVLRCNEPSSPFLI
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Known secondary structure (DSSP) TTSS

TT



SS

S
SS
T

SS
SSTTS
 .........360.........370....
Sequence QESLDEKQSHLNAKISTLMMPITL
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Known secondary structure (DSSP) TTTTS

SSS




B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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