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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4rk9B_

Fold library idPDB HeaderMoleculeTitle
c4rk9B_PDB header: transport proteinChain: B: PDB Molecule: carbohydrate abc transporter substrate-binding proteinPDBTitle: crystal structure of sugar transporter bl01359 from bacillus2 licheniformis, target efi-510856, in complex with stachyose


Added to library: Sat Nov 8 09:04:18 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VTLTMFSTMTNDSEKNTLRSIADDFEKENEGIKIDISFPGPDYENMLRVKMAANDMPDLFDTHGWAKIRY
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Known secondary structure (DSSP)




SSTT


GGGTT


S

TT
TTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence GEYTADLKDMDWVKHLDPNLDPILKDEKGKVYAYPFNQAKDGIVYNAGLLKKYGLKPPQTLDELMHALET
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Known secondary structure (DSSP) GGGB


TTSGGGGGB
GGGB
TT

B

S

T



SB
 .........150.........160.........170.........180.........190.........200.........210
Sequence IKEKSNGSVIPFWFAGSDKGALAQFYDQLATPLLITDDRRNEKKALENGTFDWSDYTLLAETFKEMQEKQ
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Known secondary structure (DSSP) TTSS


TTSTT
TTS

T


STTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LINKDILTAKPSQLVELMAQEKIGFTLSVTSIGPDTREVNPDIQLGVMPTPAVYEGDKPSWIGGERHTVA
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Known secondary structure (DSSP)
B
TTTTT

GGGTT
GGG


TT

B
BSSTT



SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VWKDSEHLEEAKRFIEFAAQPKYVKKIAEATSFPQALTNTEAENYYSKFYDQYEEIKIEPYFDRVYLPSG
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Known secondary structure (DSSP) BTT
S
TSSS


SBTT
SS

TTTTTS
TS
TT
 .........360.........370.........380....
Sequence MWDVMGTTGQELLAGTLTPKQVSEKMKQEYSRLQ
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Known secondary structure (DSSP) TTSS
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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