PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4rk1F_

Fold library id	PDB Header	Molecule	Title
c4rk1F_	PDB header: transcription regulator	Chain: F: PDB Molecule: ribose transcriptional regulator;	PDBTitle: crystal structure of laci family transcriptional regulator from2 enterococcus faecium, target efi-512930, with bound glucose

Links to external resources
Added to library: Sat Nov 1 09:32:29 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K T I G V L V P D I T N P F F S T L X R G I E D I L Y K Q N F V T I L C N A D S I E Y L A E L T R R G V D G F I I A T S A V S T D A I N E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S T T
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L K K Q G R P F I V L D Q K K S E G F S D A V R T D D F R G G Y L A G X H L L S L G H Q T I A L V Y P E N P P E N V H A R I E G F K S A L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
T T S
T T
T T
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V Y Q I P H D Q L I L L P T Q F S K Q G G Y Q I T A E L L D S A A T G V F A L N D E L A F G L Y R G L E E A G K S I P E D Y S I I G Y D N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G S
S S T S
S S S T T
T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . .

Sequence D X C E Y I K P K L T T I A Q P I F E L G Q T S A K L L L D R I Q F P E K E W E E K R L P V R F E K R F S T A P L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G T S S S
T T S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	T	I	G	V	L	V	P	D	I	T	N	P	F	F	S	T	L	X	R	G	I	E	D	I	L	Y	K	Q	N	F	V	T	I	L	C	N	A	D	S	I	E	Y	L	A	E	L	T	R	R	G	V	D	G	F	I	I	A	T	S	A	V	S	T	D	A	I	N	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		T	T	S																	T	T																				T	T									T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	K	K	Q	G	R	P	F	I	V	L	D	Q	K	K	S	E	G	F	S	D	A	V	R	T	D	D	F	R	G	G	Y	L	A	G	X	H	L	L	S	L	G	H	Q	T	I	A	L	V	Y	P	E	N	P	P	E	N	V	H	A	R	I	E	G	F	K	S	A	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	T							T	T	S				T	T																						T	T			S							S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	Y	Q	I	P	H	D	Q	L	I	L	L	P	T	Q	F	S	K	Q	G	G	Y	Q	I	T	A	E	L	L	D	S	A	A	T	G	V	F	A	L	N	D	E	L	A	F	G	L	Y	R	G	L	E	E	A	G	K	S	I	P	E	D	Y	S	I	I	G	Y	D	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			G	G	G	S							S	S							T							S			S					S	S														T	T			T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Sequence	D	X	C	E	Y	I	K	P	K	L	T	T	I	A	Q	P	I	F	E	L	G	Q	T	S	A	K	L	L	L	D	R	I	Q	F	P	E	K	E	W	E	E	K	R	L	P	V	R	F	E	K	R	F	S	T	A	P	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	T	S	S	S																											T	T	S															S	S