PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4rhpB_

Fold library id	PDB Header	Molecule	Title
c4rhpB_	PDB header: biosynthetic protein	Chain: B: PDB Molecule: ubiquinone biosynthesis protein coq9, mitochondrial;	PDBTitle: crystal structure of human coq9 in complex with a phospholipid,2 northeast structural genomics consortium target hr5043

Links to external resources
Added to library: Sat Oct 25 09:15:03 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y E S E E Q L Q H R I L T A A L E F V P A H G W T A E A I A E G A Q S L G L S S A A A S X F G K D G S E L I L H F V T Q C N T R L T R V L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S T T
T T T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E E Q K L V Q L G Q A E K R K T D Q F L R D A V E T R L R X L I P Y I E H W P R A L S I L X L P H N I P S S L S L L T S X V D D X W H Y A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
G G G G G G T T T T S T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . .

Sequence D F N W Y T R R A X L A A I Y N T T E L V X X Q D S S P D F E D T W R F L E N R V N D A X N X G T G E A L V Q G L X G A A V T L K N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S G G G T
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	E	S	E	E	Q	L	Q	H	R	I	L	T	A	A	L	E	F	V	P	A	H	G	W	T	A	E	A	I	A	E	G	A	Q	S	L	G	L	S	S	A	A	A	S	X	F	G	K	D	G	S	E	L	I	L	H	F	V	T	Q	C	N	T	R	L	T	R	V	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																G	G	G						S	S											T	T			T	T	T	T			S		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	E	Q	K	L	V	Q	L	G	Q	A	E	K	R	K	T	D	Q	F	L	R	D	A	V	E	T	R	L	R	X	L	I	P	Y	I	E	H	W	P	R	A	L	S	I	L	X	L	P	H	N	I	P	S	S	L	S	L	L	T	S	X	V	D	D	X	W	H	Y	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S	S																		G	G	G	G	G	G	T	T	T									T	S	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Sequence	D	F	N	W	Y	T	R	R	A	X	L	A	A	I	Y	N	T	T	E	L	V	X	X	Q	D	S	S	P	D	F	E	D	T	W	R	F	L	E	N	R	V	N	D	A	X	N	X	G	T	G	E	A	L	V	Q	G	L	X	G	A	A	V	T	L	K	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							T	T			S	G	G	G																	T																			T