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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4rh7A_

Fold library idPDB HeaderMoleculeTitle
c4rh7A_PDB header: motor proteinChain: A: PDB Molecule: green fluorescent protein/cytoplasmic dynein 2 heavy chainPDBTitle: crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi


Added to library: Sat Dec 13 13:38:12 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QGEVTIREALRELDLWGVGAVFTLIDYEDSQSRTMKLIKDWKDIVNQVGDNRCLLQSLKDSPYYKGFEDK
Predicted secondary structure














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Known secondary structure (DSSP)
T
B



SS




SGGGGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence VSIWERKLAELDEYLQNLNHIQRKWVYLEPIFGRGALPKEQTRFNRVDEDFRSIMTDIKKDNRVTTLTTH
Predicted secondary structure




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Known secondary structure (DSSP) S

S
BSGGGGTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence AGIRNSLLTILDQLQRCQRSLNEFLEEKRSAFPRFYFIGDDDLLEILGQSTNPSVIQSHLKKLFAGINSV
Predicted secondary structure


















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Known secondary structure (DSSP) TTSGGGGGS

SS
TTTSSS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence CFDEKSKHITAMKSLEGEVVPFKNKVPLSNNVETWLNDLALEMKKTLEQLLKECVTTGRSSQGAVDPSLF
Predicted secondary structure




















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Known secondary structure (DSSP)


TTSS



TT


SS




SSSSS



TTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PSQILCLAEQIKFTEDVENAIKDHSLHQIETQLVNKLEQYTNIDTSSEDPGNTESGILELKLKALILDII
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP)



TTSSSS
TT


 .........360.........370.........380.........390.........400.........410.........420
Sequence HNIDVVKQLNQIQVHTTEDWAWKKQLRFYMKSDHTCCVQMVDSEFQYTYEYQGNASKLVYTPLTDKCYLT
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Known secondary structure (DSSP) T
S
TT
S

TTS
TT






S






 .........430.........440.........450.........460.........470.........480.........490
Sequence LTQAMKMGLGGNPYGPAGTGKTESVKALGGLLGRQVLVFNCDEGIDVKSMGRIFVGLVKCGAWGCFDEFN
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Known secondary structure (DSSP) T

STT

TT



TT

T
TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence RLEESVLSAVSMQIQTIQDALKNHRTVCELLGKEVEVNSNSGIFITMNPAGKGYGGRQKLPDNLKQLFRP
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Known secondary structure (DSSP) SS
T
STT

SS
B

S
TTT
S




TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VAMSHPDNELIAEVILYSEGFKDAKVLSRKLVAIFNLSRELLTPQQHYDWGLRALKTVLRGSGNLLRQLN
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Known secondary structure (DSSP)





T
TTS


SS


S
 .........640.........650.........660.........670.........680.........690.........700
Sequence KSGTTQNANESHIVVQALRLNTMSKFTFTDCTRFDALIKDVFPGIELKEVEYDELSAALKQVFEEANYEI
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Known secondary structure (DSSP) S


TTT

STTT







T


 .........710.........720.........730.........740.........750.........760.........770
Sequence IPNQIKKALELYEQLCQRMGVVIVGPSGAGKSTLWRMLRAALCKTGKVVKQYTMNPKAMPRYQLLGHIDM
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Known secondary structure (DSSP)

S

TTSSSS


TTTS

T
 .........780.........790.........800.........810.........820.........830.........840
Sequence DTREWSDGVLTNSARQVVREPQDVSSWIICDGDIDPEWIESLNSVLDDNRLLTMPSGERIQFGPNVNFVF
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Known secondary structure (DSSP) TTT

S
SS

S


GGGSSS


B
TTS
B



TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence ETHDLSCASPATISRMGMIFLSDEETDLNSLIKSWLRNQPAEYRNNLENWIGDYFEKALQWVLKQNDYVV
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Known secondary structure (DSSP) S

TT

S

TTT

S
STT


SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence ETSLVGTVMNGLSHLHGCRDHDEFIINLIRGLGGNLNMKSRLEFTKEVFHWARESPPDFHKPMDTYYDST
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Known secondary structure (DSSP)


TSTT

STSS
SSS

S
SS
GGG



TT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence RGRLATYVLKKPEDLTADDFSNGLTLPVIQTPDMQRGLDYFKPWLSSDTKQPFILVGPEGCGKGMLLRYA
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Known secondary structure (DSSP) T







B

S

STTTT
SSSS



B
SGGG




TTSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence FSQLRSTQIATVHCSAQTTSRHLLQKLSQTCMVISTNTGRVYRPKDCERLVLYLKDINLPKLDKWGTSTL
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Known secondary structure (DSSP)
SS



TT

TTB

B

SSS

BSS
SSS
SS
S
B
TTS
B
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence VAFLQQVLTYQGFYDENLEWVGLENIQIVASMSAGGRLGRHKLTTRFTSIVRLCSIDYPEREQLQTIYGA
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Known secondary structure (DSSP) S
SSS

S


TTSTT




TTS




 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YLEPVLHKNLKNHSIWGSSSKIYLLAGSMVQVYEQVRAKFTVDDYSHYFFTPCILTQWVLGLFRYDLEGG
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Known secondary structure (DSSP) TTSSSSSSS


TTT
TT



GGGGB



S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SSNHPLDYVLEIVAYEARRLFRDKIVGAKELHLFDIILTSVFQGDWGSDILDNMSDSFYVTWGARHNSGA
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Known secondary structure (DSSP) S



TTTT


SSS
SS


TTSSS
GGG


 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence PGQPLPPHGKPLGKLNSTDLKDVIKKGLIHYGRDNQNLDILLFHEVLEYMSRIDRVLSFPGGSLLLAGRS
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Known secondary structure (DSSP)


S

TT
S
BS







STT



T
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence GVGRRTITSLVSHMHGAVLFSPKISRGYELKQFKNDLKHVLQLAGIEAQQVVLLLEDYQFVHPTFLEMIN
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Known secondary structure (DSSP) TS
T





TT

T


GGG
SST
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence SLLSSGEVPGLYTLEELEPLLLPLKDQASQDGFFGPVFNYFTYRIQQNLHIVLIMDSANSNFMINCESNP
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Known secondary structure (DSSP) S

TTTS
T

S

SSSTTS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence ALHKKCQVLWMEGWSNSSMKKIPEMLFSEVDPDFLKSFLLIHESCKAYGATPSQYMTFLHVYSAISSSKK
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Known secondary structure (DSSP) S

S




TTT


 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence KELLKRQSHLQAGVSKLNEAKALVDELNRKAGEQSVLLKTKQDEADAALQMITVSMQDASEQKTELERLK
Predicted secondary structure
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Known secondary structure (DSSP)
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence HRIAEEVVKIEERKNKIDDELKEVQPLVNEAKLAVGNIKPESLSEIRSLRMPPDVIRDILEGVLRLMGIF
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Known secondary structure (DSSP)

ST
SS

TT

 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence DTSWVSMKSFLAKRGVREDIATFDARNISKEIRESVEELLFKNKGSFDPKNAKRASTAAAPLAAWVKANI
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Known secondary structure (DSSP)


T
TTTTT

STT

TTT

TT
TTTT
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence QYSHVLERIHPLETEQAGLESNLKKTEDRKRKLEELLNSVGQKVSELKEKFQSRTSEAAKLEAEVSKAQE
Predicted secondary structure
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Known secondary structure (DSSP)
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence TIKAAEVLINQLDREHKRWNAQVVEITEELATLPKRAQLAAAFITYLSAAPESLRKTCLEEWTKSAGLEK
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Known secondary structure (DSSP) TTTSS
T

S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence FDLRRFLCTESEQLIWKSEGLPSDDLSIENALVILQSRVCPFLIDPSSQATEWLKTHLKDSRLEVINQQD
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Known secondary structure (DSSP) S
S
TT


STT

SS
SSTTTSS

SS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence SNFITALELAVRFGKTLIIQEMDGVEPVLYPLLRRDLVAQGPRYVVQIGDKIIDYNEEFRLFLSTRNPNP
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Known secondary structure (DSSP) TTT

S

SS

GGGTT
TTTT
TT

B
SSS
S
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence FIPPDAASIVTEVNFTTTRSGLRGQLLALTIQHEKPDLEEQKTKLLQQEEDKKIQLAKLEESLLETLATS
Predicted secondary structure








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Known secondary structure (DSSP)


TT




T
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence QGNILENKDLIESLNQTKASSALIQESLKESYKLQISLDQERDAYLPLAESASKMYFIISDLSKINNMYR
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Known secondary structure (DSSP) SS
TTT
TTSTT

 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence FSLAAFLRLFQRALQNKQDSENTEQRIQSLISSLQHMVYEYICRCLFKADQLMFALHFVRGMHPELFQEN
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)

TT


S




SSS
SS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence EWDTFTGVDQLPSWIDQERSWAVATLKIALPSLYQTLCFEDAALWRTYYNNSMCEQEFPSILAKKVSLFQ
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Known secondary structure (DSSP) T


S
SSS

TTTT
S
TT
GGG

S
TT
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence QILVVQVLRPDRLQSAMALFACKTLGLKEVSPLPLNLKRLYKETLEIEPILIIISPGADPSQELQELANA
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Known secondary structure (DSSP)
T
S
SS




TT

TTS


TT


 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence ERSGECYHQVAMGQGQADLAIQMLKECARNGDWLCLKNLHLVVSWLPVLEKELNTLQPKDTFRLWLTAEV
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Known secondary structure (DSSP)

TT



TTT

GGG
TTT



TT


 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence HPNFTPILLQSSLKITYESPPGLKKNLMRTYESWTPEQISKKDNTHRAHALFSLAWFHAACQERRNYIPQ
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Known secondary structure (DSSP)
TT

SS



SSS


TTTTTTTTSTTT
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence GWTKFYEFSLSDLRAGYNIIDRLFDGAKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSVI
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Known secondary structure (DSSP) T
SS




SSS


STSTTT







 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence IFPYSVSLPQSCSILDYRAVIEKIPEDDKPSFFGLPANIARSSQRMISSQVISQLRILGRSITAGSKFDR
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Known secondary structure (DSSP)


TTT




S
S
SS

T

TTT







 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence EIWSNELSPVLNLWKKLNQNSNLIHQKVPPPNDRQGSPILSFIILEQFNAIRLVQSVHQSLAALSKVIRG
Predicted secondary structure













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Known secondary structure (DSSP) STTSSTTS







SSS
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence TTLLSSEVQKLASALLNQKCPLAWQSKWEGPEDPLQYLRGLVARALAIQNWVDKAEKQALLSETLDLSEL
Predicted secondary structure
































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Known secondary structure (DSSP)




TS

S


SSTT
TTTSB

GGG
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence FHPDTFLNALRQETARAVGRSVDSLKFVASWKGRLQEAKLQIKISGLLLEGCSFDGNQLSENQLDSPSVS
Predicted secondary structure






























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Known secondary structure (DSSP) SST

GGG
SSS

SS
SS


SSTT


SSS
S
 .........2950.........2960.........2970.........2980.........2990.........3000.....
Sequence SVLPCFMGWIPQDACGPYSPDECISLPVYTSAERDRVVTNIDVPCGGNQDQWIQCGAALFLKNQV
Predicted secondary structure


































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Known secondary structure (DSSP)


TTS

SS
TTTSSSS

S

S
T


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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