PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4rfaA_

Fold library id	PDB Header	Molecule	Title
c4rfaA_	PDB header: transcription regulator	Chain: A: PDB Molecule: lmo0740 protein;	PDBTitle: crystal structure of cyclic nucleotide-binding domain containing2 protein from listeria monocytogenes egd-e

Links to external resources
Added to library: Sat Oct 18 08:24:57 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E K L D T V L G Y L K E F P D Y Y K Y V T K K T Y T L N E K I I F E D E K A K S I F F I V E G Y A A V E L E D N L R K T N Y I S I F V L P Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S T T T T
B
S S
T T
S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N V L G I D A F S S Y P K H S I T V X S E S L X L Y K I D A D F L L N I L S I K P D V N D F L L T S I A D V F A R H Y A L L G X I A K T P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
S
S S S S S T T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E R I Y X A L E N L A V E X G T E D E E R N E I V L P N F I N Q S V L A R Y C R T T Q P N I S N L L T E L V E E E F L I N K K S P Y R I D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
T T S
T T S B S
S S S S
T

. . . .

Sequence D S L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	K	L	D	T	V	L	G	Y	L	K	E	F	P	D	Y	Y	K	Y	V	T	K	K	T	Y	T	L	N	E	K	I	I	F	E	D	E	K	A	K	S	I	F	F	I	V	E	G	Y	A	A	V	E	L	E	D	N	L	R	K	T	N	Y	I	S	I	F	V	L	P	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	S	T	T												T	T		B							S	S																		T	T		S	S									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	V	L	G	I	D	A	F	S	S	Y	P	K	H	S	I	T	V	X	S	E	S	L	X	L	Y	K	I	D	A	D	F	L	L	N	I	L	S	I	K	P	D	V	N	D	F	L	L	T	S	I	A	D	V	F	A	R	H	Y	A	L	L	G	X	I	A	K	T	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G	G		S										S	S																			S	S	S	T	T																			T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	R	I	Y	X	A	L	E	N	L	A	V	E	X	G	T	E	D	E	E	R	N	E	I	V	L	P	N	F	I	N	Q	S	V	L	A	R	Y	C	R	T	T	Q	P	N	I	S	N	L	L	T	E	L	V	E	E	E	F	L	I	N	K	K	S	P	Y	R	I	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S	S							T	T										T	T	S															T	T	S	B	S		S	S	S	S					T
	.	.	.	.
Sequence	D	S	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T