PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4rd8B_

Fold library id	PDB Header	Molecule	Title
c4rd8B_	PDB header: structural genomics, unknown function	Chain: B: PDB Molecule: uncharacterized protein;	PDBTitle: the crystal structure of a functionally-unknown protein from2 legionella pneumophila subsp. pneumophila str. philadelphia 1

Links to external resources
Added to library: Sat Oct 4 09:18:53 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H X F F S K D E K N P I K R A L Q G E L L Q N E P F I Q L C T K I E N Y L X D T E A V N E Q L I E L N E Q L T X R L K E K G L K P G E K G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S T
T
T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T K Q L R T L I Q E I L T E A G F R E G X L Q T I G N K P L A A A D F X F L V S S G F X L K D S S L R A S S H G E L T H A I Q W C L I I L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
B
T T
T T
B
S S
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R K K D S S F L E N I P T S E I C D R I Y K K L G H Q D S S N P N Y P F T C W D V L I D K L G E I D S R S P E W L S D H I Q N D E D Q I F P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T T
G G G T G G G G G S G G G S
T T S S S
T T
S S T T S
T T S S

. . . . . . . .

Sequence V L R E V I K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	X	F	F	S	K	D	E	K	N	P	I	K	R	A	L	Q	G	E	L	L	Q	N	E	P	F	I	Q	L	C	T	K	I	E	N	Y	L	X	D	T	E	A	V	N	E	Q	L	I	E	L	N	E	Q	L	T	X	R	L	K	E	K	G	L	K	P	G	E	K	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		T	T	S					T																							T																								T			T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	K	Q	L	R	T	L	I	Q	E	I	L	T	E	A	G	F	R	E	G	X	L	Q	T	I	G	N	K	P	L	A	A	A	D	F	X	F	L	V	S	S	G	F	X	L	K	D	S	S	L	R	A	S	S	H	G	E	L	T	H	A	I	Q	W	C	L	I	I	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T			S	S		B			T	T															T	T			B						S	S			S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	K	K	D	S	S	F	L	E	N	I	P	T	S	E	I	C	D	R	I	Y	K	K	L	G	H	Q	D	S	S	N	P	N	Y	P	F	T	C	W	D	V	L	I	D	K	L	G	E	I	D	S	R	S	P	E	W	L	S	D	H	I	Q	N	D	E	D	Q	I	F	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G	G	T	T			G	G	G					T	G	G	G	G	G	S	G	G	G	S		T	T	S	S	S										T	T		S	S	T	T	S												T	T	S	S
	.	.	.	.	.	.	.	.
Sequence	V	L	R	E	V	I	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)