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| Protein Homology/analogY Recognition Engine V 2.2 | |||||||
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| Fold library id | PDB Header | Molecule | Title |
|---|---|---|---|
| c4rcaB_ | PDB header: signaling protein | Chain: B: PDB Molecule: slit and ntrk-like protein 1; | PDBTitle: crystal structure of human ptpdelta and human slitrk1 complex |
| Added to library: Sat Nov 22 08:40:21 2014 | |
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| Links to external resources | |
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|   | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
| Sequence | D | V | C | K | E | K | I | C | S | C | N | E | I | E | G | D | L | H | V | D | C | E | K | K | G | F | T | S | L | Q | R | F | T | A | P | T | S | Q | F | Y | H | L | F | L | H | G | N | S | L | T | R | L | F | P | N | E | F | A | N | F | Y | N | A | V | S | L | H | M | E | N |
| Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Known secondary structure (DSSP) | T | T | T | T | S | S | B | S | S | S | ![]() | ![]() | ![]() | ![]() | T | T | S | S | S | S | S | S | S | ![]() | ![]() | ![]() | ![]() | T | T | S | ![]() | ![]() | T | T | T | T | G | G | G | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
| Sequence | N | G | L | H | E | I | V | P | G | A | F | L | G | L | Q | L | V | K | R | L | H | I | N | N | N | K | I | K | S | F | R | K | Q | T | F | L | G | L | D | D | L | E | Y | L | Q | A | D | F | N | L | L | R | D | I | D | P | G | A | F | Q | D | L | N | K | L | E | V | L | I | L |
| Predicted secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Known secondary structure (DSSP) | S | ![]() | ![]() | T | T | T | T | T | T | S | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | T | T | T | T | T | T | S | S | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | G | G | G | S | T | T | T | T | ![]() | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
| Sequence | N | D | N | L | I | S | T | L | P | A | N | V | F | Q | Y | V | P | I | T | H | L | D | L | R | G | N | R | L | K | T | L | P | Y | E | E | V | L | E | Q | I | P | G | I | A | E | I | L | L | E | D | N | P | W | D | C | T | C | D | L | L | S | L | K | E | W | L | E | N | I | P |
| Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||
| SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Known secondary structure (DSSP) | S | S | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | T | T | T | T | S | ![]() | ![]() | ![]() | S | ![]() | ![]() | S | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S |   | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . |
| Sequence | K | N | A | L | I | G | R | V | V | C | E | A | P | T | R | L | Q | G | K | D | L | N | E | T | T | E | Q | D | L | C | P | |||||||||||||||||||||||||||||||||||||||
| Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Known secondary structure (DSSP) | T | T | B | S | B | ![]() | ![]() | ![]() | T | T | T | T | T | B | G | G | G | ![]() | ![]() | ![]() | ![]() |
| Download: | PDB structure | FASTA sequence |
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