PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4r9nA_

Fold library id	PDB Header	Molecule	Title
c4r9nA_	PDB header: transcription	Chain: A: PDB Molecule: lmo0547 protein;	PDBTitle: deor family transcriptional regulator from listeria monocytogenes.

Links to external resources
Added to library: Sat Sep 20 08:58:00 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N A T V D L E Q K L E E K F G L E E A I V V A T H D X S E E E A L N F L A K E A A Y T L S K R I A K V K T L G I S W G K T I R K F A N E F P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
S S
T T
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F I P H K D L T I I P L I G G D L H S N Q I C Y D L K K K X K C H S K Y L Y A P A L V E D T E X K T D L S K N K Y I S E V L E E G K T V D X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S B
S T
S
S B
S T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A I V G V S S P Y N H S T X E E I G Y I N S E D I E E L R Y K D V V G D I N S R F F T A D G K E A K T E I N T H V I G L S L E E L K N I P T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S S S
T T S S
T T T T T T S
B
S S T B
B
T S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . .

Sequence V V A L A N G L Q K K E A L V A A L N A G L I D V I V I T D R X A E Y I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	A	T	V	D	L	E	Q	K	L	E	E	K	F	G	L	E	E	A	I	V	V	A	T	H	D	X	S	E	E	E	A	L	N	F	L	A	K	E	A	A	Y	T	L	S	K	R	I	A	K	V	K	T	L	G	I	S	W	G	K	T	I	R	K	F	A	N	E	F	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T		S								S	S																							T	T		S							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	I	P	H	K	D	L	T	I	I	P	L	I	G	G	D	L	H	S	N	Q	I	C	Y	D	L	K	K	K	X	K	C	H	S	K	Y	L	Y	A	P	A	L	V	E	D	T	E	X	K	T	D	L	S	K	N	K	Y	I	S	E	V	L	E	E	G	K	T	V	D	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T						S	B					S													T								S		S	B													S												T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	I	V	G	V	S	S	P	Y	N	H	S	T	X	E	E	I	G	Y	I	N	S	E	D	I	E	E	L	R	Y	K	D	V	V	G	D	I	N	S	R	F	F	T	A	D	G	K	E	A	K	T	E	I	N	T	H	V	I	G	L	S	L	E	E	L	K	N	I	P	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						B		S	S	S	S						T	T	S	S											T	T						T	T					T	T	S		B		S	S					T	B		B								T	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Sequence	V	V	A	L	A	N	G	L	Q	K	K	E	A	L	V	A	A	L	N	A	G	L	I	D	V	I	V	I	T	D	R	X	A	E	Y	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								G	G	G										T	T			S