PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4r8zB_

Fold library id	PDB Header	Molecule	Title
c4r8zB_	PDB header: hydrolase	Chain: B: PDB Molecule: cyclic di-gmp phosphodiesterase;	PDBTitle: crystal structure of pa4781 hd-gyp domain from pseudomonas aeruginosa2 at 2.2a resolution showing a bi-metallic ni ion center

Links to external resources
Added to library: Sat Mar 7 08:32:09 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R T R Q L Q Q L Q D A V I E A L A T L G D L R D N P R S R H L P R I E R Y V R L L A E H L A A Q R A F A D E L T P E A V D L L S K S A L L H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T S
S
S T T
G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D I G K V A V P D R V L L N P G Q L D A A D T A L L Q G H T R A G R D A L A S A E R R L G Q P S G F L R F A R Q I A Y S H H E R W D G R G F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G G G S
T
S
T
S
T T
T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P E G L A G E R I P L A A R I V A L A D R Y D E L T S R H A Y R P P L A H A E A V L L I Q A G A G S E F D P R L V E A F V A V A D A F A E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
G G G S
T S
S S
T B T T T B

. . . . . . .

Sequence A R R Y A D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	T	R	Q	L	Q	Q	L	Q	D	A	V	I	E	A	L	A	T	L	G	D	L	R	D	N	P	R	S	R	H	L	P	R	I	E	R	Y	V	R	L	L	A	E	H	L	A	A	Q	R	A	F	A	D	E	L	T	P	E	A	V	D	L	L	S	K	S	A	L	L	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T	T	T	T	S		S																					S					T	T													G	G	G	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	I	G	K	V	A	V	P	D	R	V	L	L	N	P	G	Q	L	D	A	A	D	T	A	L	L	Q	G	H	T	R	A	G	R	D	A	L	A	S	A	E	R	R	L	G	Q	P	S	G	F	L	R	F	A	R	Q	I	A	Y	S	H	H	E	R	W	D	G	R	G	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	G	G	G	G	G	S						T			S												T																		S															T	T			T	T	S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	E	G	L	A	G	E	R	I	P	L	A	A	R	I	V	A	L	A	D	R	Y	D	E	L	T	S	R	H	A	Y	R	P	P	L	A	H	A	E	A	V	L	L	I	Q	A	G	A	G	S	E	F	D	P	R	L	V	E	A	F	V	A	V	A	D	A	F	A	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S				G	G	G	S																	T	S			S	S																T	B	T	T	T	B
	.	.	.	.	.	.	.
Sequence	A	R	R	Y	A	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T