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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4r8fB_

Fold library idPDB HeaderMoleculeTitle
c4r8fB_PDB header: hydrolaseChain: B: PDB Molecule: vacuolar aminopeptidase 1;PDBTitle: crystal structure of yeast aminopeptidase 1 (ape1)


Added to library: Sat Aug 15 08:31:59 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NYEDIAQEFIDFIYKNPTTYHVVSFFAELLDKHNFKYLSEKSNWQDSIGEDGGKFYTIRNGTNLSAFILG
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STT


TTS

TTTS
TT
TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KNWRAEKGVGVIGSHVDALTVKLKPVSFKGYGRIAVAPYGGTLNELWLDRDLGIGGRLLYKKKGTNEIKS
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Known secondary structure (DSSP) TT

GGG









SSS

SSSBT


TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence ALVDSTPLPVCRIPSQTIPVEPPTDDEKKSPLFGKHCIHLLRYVAKLAGVEVSELIQMDLDLFDVQKGTI
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Known secondary structure (DSSP)
TT


B
B








T
TTTTTS
TS
GGG



 .........220.........230.........240.........250.........260.........270.........280
Sequence GGIGKHFLFAPRLDDRLCSFAAMIALICYAKDVNTEESDLFSTVTLYDNEEIGSLTRQGAKGGLLESVVE
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Known secondary structure (DSSP) STTS
S
TT

TTT


S
GGGTS
STTSGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence RSSSAFTKKPVDLHTVWANSIILSADVNHLYNPNFPEVYLKNHFPVPNVGITLSLDPNGHMATDVVGTAL
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Known secondary structure (DSSP)
SS


T



B


TTSTTSS
SSS


TTS


TTSTTTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence VEELARRNGDKVQYFQIGTIGPSLASQTGARTIDLGIAQLSMHSIRAATGSKDVGLGVKFFNGFFKHWRS
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Known secondary structure (DSSP) T









BBSTTSSSTT
 ........
Sequence VYDEFGEL
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Known secondary structure (DSSP) TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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