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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4r04A_

Fold library idPDB HeaderMoleculeTitle
c4r04A_3.26PDB header: transferaseChain: A: PDB Molecule: toxin a;


Added to library: Sat Jan 9 08:11:55 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ISKEELIKLAYSIRPRENEYKTILTNLDEYNKLTTNNNENKYLQLKKLNESIDVFMNKYKTSSRNRALSN
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Known secondary structure (DSSP)

SSSSTTTS

SS





S
STT
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LKKDILKEVILIKNSNTSPVEKNLHFVWIGGEVSDIALEYIKQWADINAEYNIKLWYDSEAFLVNTLKKA
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Known secondary structure (DSSP) TT



SB
B

SS




SS

TT
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence IVESSTTEALQLLEEEIQNPQFDNMKFYKKRMEFIYDRQKRFINYYKSQINKPTVPTIDDIIKSHLVSEY
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Known secondary structure (DSSP) TTSTT

TTTSSSS


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence NRDETVLESYRTNSLRKINSNHGIDIRANSLFTEQELLNIYSQELLNRGNLAAASDIVRLLALKNFGGVY
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Known secondary structure (DSSP) S

TTTTTSTTTTT

STTS

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence LDVDMLPGIHSDLFKTISRPSSIGLDRWEMIKLEAIMKYKKYINNYTSENFDKLDQQLKDNFKLIIESKS
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Known secondary structure (DSSP)
TT



B
TTTTSS



TTS
TTS
SSSS


GGGSSS
TS
 .........360.........370.........380.........390.........400.........410.........420
Sequence EKSEIFSKLENLNVSDLEIKIAFALGSVINQALISKQGSYLTNLVIEQVKNRYQFLNQHLNPAIESDNNF
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Known secondary structure (DSSP) TTTTTB






SS
TT
TT
S


 .........430.........440.........450.........460.........470.........480.........490
Sequence TDTTKIFHDSLFNSATAENSMFLTKIAPYLQVGFMPEARSTISLSGPGAYASAYYDFINLQENTIEKTLK
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Known secondary structure (DSSP) TTS

SSSTTTTTBTTBSS


TSTT
S

SS



 .........500.........510.........520.........530.........540.........550.........560
Sequence ASDLIEFKFPENNLSQLTEQEINSLWSFDQASAKYQFEKYVRDYTGGSLSEDNGVDFNKNTALDKNYLLN
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Known secondary structure (DSSP) GGGB





T



S




SSTTT








T
 .........570.........580.........590.........600.........610.........620.........630
Sequence NKIPSNNVEEAGSKNYVHYIIQLQGDDISYEATCNLFSKNPKNSIIIQRNMNESAKSYFLSDDGESILEL
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Known secondary structure (DSSP) TTTTT





S



S
SSTTTTTSSSS


SSSSS

 .........640.........650.........660.........670.........680.........690.........700
Sequence NKYRIPERLKNKEKVKVTFIGHGKDEFNTSEFARLSVDSLSNEISSFLDTIKLDISPKNVEVNLLGCNMF
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Known secondary structure (DSSP) STT


STTSS
S

B
SSSS
S
BSS

TTTTTT


SSTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence SYDFNVEETYPGKLLLSIMDKITSTLPDVNKNSITIGANQYEVRINSEGRKELLAHSGKWINKEEAIMSD
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Known secondary structure (DSSP)

SS

TTSTTTTSTT

TT




TTS

TTSS

 .........780.........790.........800.........810.........820.........830.........840
Sequence LSSKEYIFFDSIDNKLKAKSKNIPGLASISEDIKTLLLDASVSPDTKFILNNLKLNIESSIGDYIYYEKL
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Known secondary structure (DSSP)


TTSSS


SSSS
TT

 .........850.........860.........870.........880.........890.........900.........910
Sequence EPVKNIIHNSIDDLIDEFNLLENVSDELYELKKLNNLDEKYLISFEDISKNNSTYSVRFINKSNGESVYV
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Known secondary structure (DSSP)




SS

TT

TT
SSSTTTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence ETEKEIFSKYSEHITKEISTIKNSIITDVNGQLDHTSQVNTLNAAFFIQSLIDYSSNKDVLNDLSTSVKV
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Known secondary structure (DSSP)


TTS

SS








TTGGG
TT



 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QLYAQLFSTGLNTIYDSIQLVNLISNAVNDTINVLPTITEGIPIVSTILDGINLGAAIKELLDEHDPLLK
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Known secondary structure (DSSP) SS
GGG


S



S



SSS




TT

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KELEAKVGVLAINMSLSIAATVASIVGIGAEVTIFLLPIAGISAGIPSLVNNELILHDKATSVVNYFNHL
Predicted secondary structure
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Known secondary structure (DSSP) T




S

B
BTTTT



SSS
BSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence SESKKYGPLKTEDDKILVPIDDLVISEIDFNNNSIKLGTCNILAMEGGSGHTVTGNIDHFFSSPSISSHI
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Known secondary structure (DSSP) S
STTT
TT

TTTT


B


SS
SSS

S


B
SSSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence PSLSIYSAIGIETENLDFSKKIMMLPNAPSRVFWWETGAVPGLRSLENDGTRLLDSIRDLYPGKFYWRFY
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Known secondary structure (DSSP)
S



SS




S









S
TT


STTT

S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence AFFDYAITTLKPVYEDTNIKIKLDKDTRNFIMPTITTNEIRNKLSYSFDGAGGTYSLLLSSYPISTNINL
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Known secondary structure (DSSP) SSS

B





SS



B
ST


SS


SS


 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SKDDLWIFNIDNEVREISIENGTIKKGKLIKDVLSKIDINKNKLIIGNQTIDFSGDIDNKDRYIFLTCEL
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Known secondary structure (DSSP) STT


TT
TTSSSS

SS
SS
S



SS

S
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence DDKISLIIEINLVAKSYSLLLSGDKNYLISNLSNTIEKINTLGLDSKNIAYNYTDESNNKYFGAISKTSQ
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Known secondary structure (DSSP) SSS
TTTTS
T


S
GGG
TTTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence KSIIHYKKDSKNILEFYNDSTLEFNSKDFIAEDINVFMKDDINTITGKYYVDNNTDKSIDFSISLVSKNQ
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Known secondary structure (DSSP) TTTTS



TTGGG
SS

SSS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence VKVNGLYLNESVYSSYLDFVKNSDGHHNTSNFMNLFLDNISFWKLFGFENINFVIDKYFTLVGKTNLGYV
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Known secondary structure (DSSP)
TT
SS


S
STGGGGSS
S



SS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence EFICDNNKNIDIYFGEWKTSSSKSTIFSGNGRNVVVEPIYNPDTGEDISTSLDFSYEPLYGIDRYINKVL
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Known secondary structure (DSSP)
SSS

SSTTS
S



S
TTS



SGGGSSGGGG


 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence IAPDLYTSLININTNYYSNEYYPEIIVLNPNTFHKKVNINLDSSSFEYKWSTEGSDFILVRYLEESNKKI
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Known secondary structure (DSSP)


TT







S








S
S
SS
STTTTTT
 .........1760.........1770.........1780.........1790...
Sequence LQKIRIKGILSNTQSFNKMSIDFKDIKKLSLGYIMSNFKSFNS
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Known secondary structure (DSSP) TTGGG
TT
SSS

B
S
B



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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