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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4qvjA_

Fold library idPDB HeaderMoleculeTitle
c4qvjA_PDB header: viral proteinChain: A: PDB Molecule: vp1;PDBTitle: unliganded crystal structure of feline norovirus p domain co-2 crystallized with n-acetylneuraminic acid


Added to library: Sat Nov 22 08:13:02 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VSFSVPGLVVEDMSNSRWPAQINGLVVRGNEAQVVHFQNGRCTTEGTLLGTTTLSINSICGLRGLSVSQA
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Known secondary structure (DSSP)








GGG
B
SSSS
B




SS
B

SSS
B
TT

B
TT

S
GGGTT

ST
 .........80.........90.........100.........110.........120.........130.........140
Sequence SVADTTLWLRVEEPDGRPYDIFGDQPAPLGTPDFTAVIVGTAIRPRTASGAYLHDAYVDTTPGDADFTPS
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Known secondary structure (DSSP) T

BB
TTS
B

TTSSSSSSTT


SBS
S
TT


STT
TTGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence TGNTKIVLRGGGSGHVGQGHYWQFRPIAVEGGGSRPQYQEYNLPDYAGPTASNHDLAPPVAPRMPGELLL
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Known secondary structure (DSSP) GTTTB
TTS

SS

STTS


BTTS


TT
TTS


S



B


STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LFESDMPVWDNGAGAAPAQKIHCLLPNEFITHLFDLQAPALAEAALLRYVHPDSGRTLFECKLYREGYMV
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Known secondary structure (DSSP)

TT


S

SS




SSSTTTTTTT
 .........290.........300.........310.
Sequence VAAPAGRLNFPLDGYFRFDSWVSAFYILSPV
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Known secondary structure (DSSP) S
S



SS

TT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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