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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4qpgC_

Fold library idPDB HeaderMoleculeTitle
c4qpgC_PDB header: virusChain: C: PDB Molecule: capsid protein vp3;PDBTitle: crystal structure of empty hepatitis a virus


Added to library: Sat Oct 18 08:27:43 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MMRNETRVSTTENVVNLSNYEDARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASD
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Known secondary structure (DSSP)








SSTT



SSS
SS

SGGG






GGGTT




TTS
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SVGQQIKVIPVDPYFFQMTNTNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSGRLLFCFVPGNE
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Known secondary structure (DSSP)
TT
SSTT




BTTTTB



TT

TT
S
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LIDVTGITLKQATTAPCAVMDIAGVQSTLRFRVPWISDTPYRVNRYTKEAHQKGEYTAIGKLIVYCYNRL
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Known secondary structure (DSSP)



SS

TTSS
SSS





SSSS
GGGSSS
BTTB
S
S
 .........220.........230.........240......
Sequence TSPSNVAHHVRVNVYLSAINLECFAPLYHAMDVTTQ
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Known secondary structure (DSSP)

SSS
S










Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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