PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4qmfB_

Fold library id	PDB Header	Molecule	Title
c4qmfB_	PDB header: rna binding protein	Chain: B: PDB Molecule: krr1 small subunit processome component;	PDBTitle: structure of the krr1 and faf1 complex from saccharomyces cerevisiae

Links to external resources
Added to library: Sat Jul 12 08:16:54 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E S S F M T L F P K Y R E S Y L K T I W N D V T R A L D K H N I A C V L D L V E G S M T V K T T R K T Y D P A I I L K A R D L I K L L A R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T T
S S
S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V P F P Q A V K I L Q D D M A C D V I K I G N F V T N K E R F V K R R Q R L V G P N G N T L K A L E L L T K C Y I L V Q G N T V S A M G P F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S S S
S T T
S S
G G G S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . .

Sequence K G L K E V R R V V E D C M K N I H P I Y H I K E L M I K R E L A K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	S	S	F	M	T	L	F	P	K	Y	R	E	S	Y	L	K	T	I	W	N	D	V	T	R	A	L	D	K	H	N	I	A	C	V	L	D	L	V	E	G	S	M	T	V	K	T	T	R	K	T	Y	D	P	A	I	I	L	K	A	R	D	L	I	K	L	L	A	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T	T	T							T	T	T	T								S	S		S		T	T														T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	P	F	P	Q	A	V	K	I	L	Q	D	D	M	A	C	D	V	I	K	I	G	N	F	V	T	N	K	E	R	F	V	K	R	R	Q	R	L	V	G	P	N	G	N	T	L	K	A	L	E	L	L	T	K	C	Y	I	L	V	Q	G	N	T	V	S	A	M	G	P	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G	G	S	S	S									S	T	T		S	S														G	G	G										S								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Sequence	K	G	L	K	E	V	R	R	V	V	E	D	C	M	K	N	I	H	P	I	Y	H	I	K	E	L	M	I	K	R	E	L	A	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T			T