PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4qlpB_

Fold library id	PDB Header	Molecule	Title
c4qlpB_	PDB header: hydrolase/protein binding	Chain: B: PDB Molecule: immunity factor ift;	PDBTitle: atomic structure of tuberculosis necrotizing toxin (tnt) complexed2 with its immunity factor ift

Links to external resources
Added to library: Sat Jul 25 08:23:40 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S H M R L S D E A V D P Q Y G E P L S R H W D F T D N P A D R S R I N P V V A Q L M E D P N A P F G R D P Q G Q P Y T Q E R Y Q E R F N S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
S S
S S
T T
T T T S
T T
S
T T
T T
B
T T S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G P W G Q Q Y S N F P P N N G A V P G T R I A Y T N L E K F L S D Y G P Q L D R I G G D Q G K Y L A I M E H G R P A S W E Q R A L H V T S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T G G G B
T T
S S
S S
T T
S
G G G
T G G G T
G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . .

Sequence R D P Y H A Y T I D W L P E G W F I E V S E V A P G C G Q P G G S I Q V R I F D H Q N E M R K V E E L I R R G V L R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G S
T T
B
B T T B
T T
B
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	H	M	R	L	S	D	E	A	V	D	P	Q	Y	G	E	P	L	S	R	H	W	D	F	T	D	N	P	A	D	R	S	R	I	N	P	V	V	A	Q	L	M	E	D	P	N	A	P	F	G	R	D	P	Q	G	Q	P	Y	T	Q	E	R	Y	Q	E	R	F	N	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S				T	T	S			S	S					S	S		T	T		T	T	T	S						T	T		S		T	T		T	T		B		T	T	S		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	P	W	G	Q	Q	Y	S	N	F	P	P	N	N	G	A	V	P	G	T	R	I	A	Y	T	N	L	E	K	F	L	S	D	Y	G	P	Q	L	D	R	I	G	G	D	Q	G	K	Y	L	A	I	M	E	H	G	R	P	A	S	W	E	Q	R	A	L	H	V	T	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T									T	G	G	G	B		T	T						S	S										S						S		T	T		S						G	G	G					T	G	G	G	T			G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Sequence	R	D	P	Y	H	A	Y	T	I	D	W	L	P	E	G	W	F	I	E	V	S	E	V	A	P	G	C	G	Q	P	G	G	S	I	Q	V	R	I	F	D	H	Q	N	E	M	R	K	V	E	E	L	I	R	R	G	V	L	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	S												T	T								B			B	T	T	B												T	T			B									T	T	S