PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4qjvC_

Fold library id	PDB Header	Molecule	Title
c4qjvC_	PDB header: transferase	Chain: C: PDB Molecule: dna-directed rna polymerase subunit d;	PDBTitle: the x-ray crystal structure of rpo3/rpo11 heterodimer of euryarchaeal2 rna polymerase from thermococcus kodakarensis

Links to external resources
Added to library: Sat Oct 11 08:34:14 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M V E F K I L E K R P D S I K F I V S G V D V P F A N A L R R T I L S E V P T F A V D E V E F L E N D S A L F D E I I A H R L A M I P L T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T S
S S S
T S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P H E R F S L D A L E L D D Y T V T L S L E A E G P G M V Y S G D L K S S D G D V K P A N P N I P I V K L A E G Q R L T F N A Y A R L G R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T T
S S
S S G G G
S S T T S S B S
T T
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K D H A K W Q P G F V Y Y K Y L T K I H V S K D V P D W E E L K E L A E R R G L P V E E S D E E I V I T T I K A F Y L P R K F E E H M G K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G
T T S T T T T T
S S
S S
G G G G G G B T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . .

Sequence I R E E I V P G S F V F T V E T N G E L P V E E I V S I A L K I L M R K S D R F I N E L H K L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	V	E	F	K	I	L	E	K	R	P	D	S	I	K	F	I	V	S	G	V	D	V	P	F	A	N	A	L	R	R	T	I	L	S	E	V	P	T	F	A	V	D	E	V	E	F	L	E	N	D	S	A	L	F	D	E	I	I	A	H	R	L	A	M	I	P	L	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T								S																T	S															S	S	S											T	S		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	H	E	R	F	S	L	D	A	L	E	L	D	D	Y	T	V	T	L	S	L	E	A	E	G	P	G	M	V	Y	S	G	D	L	K	S	S	D	G	D	V	K	P	A	N	P	N	I	P	I	V	K	L	A	E	G	Q	R	L	T	F	N	A	Y	A	R	L	G	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	S		T	T		S	S														S	S					G	G	G				S	S	T	T	S	S	B	S		T	T								T	T														T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	D	H	A	K	W	Q	P	G	F	V	Y	Y	K	Y	L	T	K	I	H	V	S	K	D	V	P	D	W	E	E	L	K	E	L	A	E	R	R	G	L	P	V	E	E	S	D	E	E	I	V	I	T	T	I	K	A	F	Y	L	P	R	K	F	E	E	H	M	G	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		G	G	G																	T	T	S	T	T	T										T	T							S	S							S	S						G	G	G	G	G	G	B	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Sequence	I	R	E	E	I	V	P	G	S	F	V	F	T	V	E	T	N	G	E	L	P	V	E	E	I	V	S	I	A	L	K	I	L	M	R	K	S	D	R	F	I	N	E	L	H	K	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S	S	S