Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4qiwB_

Fold library idPDB HeaderMoleculeTitle
c4qiwB_PDB header: transcriptionChain: B: PDB Molecule: dna-directed rna polymerase;PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis


Added to library: Sat Oct 11 08:36:28 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPDIPNFKVKFGKIRIGQPEFQE
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP)



S
SSTTSSS




SSSS



S
 .........80.........90.........100.........110.........120.........130.........140
Sequence AQGQRRPLYPMDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLG
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TTS


T


TT



BTTSSSSTTTT

T
 .........150.........160.........170.........180.........190.........200.........210
Sequence EDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNKVVAKVFSYRHGYRALITVERKKDGILYVTI
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)

TT





SSS

SS

SSSSSS

TT





TTS



 .........220.........230.........240.........250.........260.........270.........280
Sequence PNVPKPVKFVYVMRALGLLTDKEIVEAVSDDPRIQQVLFDNLEDASDISTQEEALDYIGRLALPGQPKEY
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) SSS


T

S
S
TTSTTT

SS

S

T
 .........290.........300.........310.........320.........330.........340.........350
Sequence RLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLF
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) S
TTT
SSGGGTSS



TTSGGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence RVAFGQLVKDMQYQMTKTYQRENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYMSTL
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TT


SS



S


TTTTB
TTS
B
S


SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence SHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMG
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) T

S
SSS

S

GGGTTTB
SS


SSTTBTTBB
SS





T
 .........500.........510.........520.........530.........540.........550.........560
Sequence VVPIEERRPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVALYEDEEVKEVYINSDDGR
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)
TTT


SSSS

TT
S
TTSS
TT

TTT



S

 .........570.........580.........590.........600.........610.........620.........630
Sequence VRRPLIVVENGKPKLTREHVEGIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMP
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) TTSS
TTTS

TS
TT


BSSTTS

TT


S
G
 .........640.........650.........660.........670.........680.........690.........700
Sequence AAILGIPASLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFE
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) GGSS
TTGGGSSSGGGS
GGGB
S


TTTTT


SSS



SSB
TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence DRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSPNIQGYL
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TS


S

TT
S
TT
TTTT


B
TTS
B






SSSSS

 .........780.........790.........800.........810.........820.........830.........840
Sequence GEKYYRHLDEDGLIFPESKVEGKDVLVGRTSPPRRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVR
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)
TTTTTTB
SSSBB
SS

TT














TT




TTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence DLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLTG
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)


TT
TTS

TTTS
TT



S
GGGSTTTT

 .........920.........930.........940.........950.........960.........970.........980
Sequence RRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSFG
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)


B

SSSS

TTS
TTS

SSS
SB
SS
BS

GGGT






 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence EMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEDERISKVEMSYAFKL
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP) T
TTTS

TTT
SB



TTTT



SSS
SSS

 .........1060.........
Sequence LLDELKAMVIRPSLRLKDR
Predicted secondary structure





SS confidence


















Known secondary structure (DSSP) TT










Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D