PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4qfsC_

Fold library id	PDB Header	Molecule	Title
c4qfsC_	PDB header: signaling protein/inhibitor/activator	Chain: C: PDB Molecule: 5'-amp-activated protein kinase subunit gamma-1;	PDBTitle: structure of ampk in complex with br2-a769662core activator and2 staurosporine inhibitor

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Added to library: Sat Aug 9 08:36:31 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y T T F M K S H R C Y D L I P T S S K L V V F D T S L Q V K K A F F A L V T N G V R A A P L W D S K K Q S F V G M L T I T D F I N I L H R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B G G G T S
S S
T T S B T
S T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y K S A L V Q I Y E L E E H K I E T W R E V Y L Q D S F K P L V C I S P N A S L F D A V S S L I R N K I H R L P V I D P E S G N T L Y I L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
B S S S S
B
S S S B T T
S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H K R I L K F L K L F I T S L E E L Q I A M V R T T T P V Y V A L G I F V Q H R V S A L P V V D E K G R V V D I Y S K F D V I N L A A E K T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S S
B T
S
S S S B T G G G T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . .

Sequence Y N N L D V S V T K A L Q H R L K C Y L H E T L E A I I N R L V E A E V H R L V D V V K G I V S L S D I L Q A L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S B T T
S S S
T T
S
B

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	T	T	F	M	K	S	H	R	C	Y	D	L	I	P	T	S	S	K	L	V	V	F	D	T	S	L	Q	V	K	K	A	F	F	A	L	V	T	N	G	V	R	A	A	P	L	W	D	S	K	K	Q	S	F	V	G	M	L	T	I	T	D	F	I	N	I	L	H	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	B	G	G	G	T	S		S	S								T	T	S	B												T		S							T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	K	S	A	L	V	Q	I	Y	E	L	E	E	H	K	I	E	T	W	R	E	V	Y	L	Q	D	S	F	K	P	L	V	C	I	S	P	N	A	S	L	F	D	A	V	S	S	L	I	R	N	K	I	H	R	L	P	V	I	D	P	E	S	G	N	T	L	Y	I	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S									B									S	S	S	S							B		S	S	S	B											T	T		S							T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	K	R	I	L	K	F	L	K	L	F	I	T	S	L	E	E	L	Q	I	A	M	V	R	T	T	T	P	V	Y	V	A	L	G	I	F	V	Q	H	R	V	S	A	L	P	V	V	D	E	K	G	R	V	V	D	I	Y	S	K	F	D	V	I	N	L	A	A	E	K	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S	S														S	S		B												T		S							S	S	S	B							T	G	G	G							T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Sequence	Y	N	N	L	D	V	S	V	T	K	A	L	Q	H	R	L	K	C	Y	L	H	E	T	L	E	A	I	I	N	R	L	V	E	A	E	V	H	R	L	V	D	V	V	K	G	I	V	S	L	S	D	I	L	Q	A	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S				S	B						T	T						S	S	S												T	T		S					B