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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4qfkG_

Fold library idPDB HeaderMoleculeTitle
c4qfkG_PDB header: peptide binding proteinChain: G: PDB Molecule: abc transporter periplasmic peptide-binding protein;PDBTitle: crystal structure of dipeptide binding protein from pseudoalteromonas2 sp. sm9913


Added to library: Sat Jan 31 09:01:56 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GLVYCAEANPVSFNPQVTTTGSTIDIIANQLYDRLISIDPVTAEFKSELATDWKISKDGKSVTFTLRKGV
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Known secondary structure (DSSP)

SS

S
S
GGG




BS
TTT

SS
SSS

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KFHTTAYFTPTREFNADDVIFTFSRLFDVYNPYHFVGDANYPYFQSVGIDQLIRKIVRVSDHQVRFELFN
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Known secondary structure (DSSP)




SS


SS


TTT
TTSTTTTSSS


TGGGTTTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence AESSFLANMATDFAVVLSKEYAMALKANNQENLFDQYPVGTGPYIYKEYRRDHLVRFYKNADYWKHEVAL
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Known secondary structure (DSSP)

TTTTSTT
B


T
GGGTTTS


SSSTTT
TT
SSS

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence EQLVYDITPNGTTRIAKILTKECDVTAHPSSAQLSILAQRDDINVERETNLNIGYWAFNTERPPFDNLKV
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Known secondary structure (DSSP) S



TTS
S



TT
S
SS
S
TTSTTTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence RQALVHAIDIEKIMQAVYYGNGLRARSILPPTSWAFEPQKNMPIFDPQLAKKLLTEAGYEKGFDMSIWAM
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Known secondary structure (DSSP)

TSTT




SSSS
TTSTT



TT




TTS

S

 .........360.........370.........380.........390.........400.........410.........420
Sequence PVSRIYNPNARKMAELMQSDLRKIGVNVNIVEYEWNTFIQRIGEHRHDSVLLGWAADTPDPDNFFSPLLS
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Known secondary structure (DSSP) SS
BTTBS
TTT


TT

S
SSSSGGGGTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence CTATFSGKNPANWCNPEFDLLLTKALDTTDLNLRKQYYDAAQSMIIEQLPLYPIAHGMRFQASSADVEGI
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Known secondary structure (DSSP) TT

TT







S

-
TT
BS
 .........500.....
Sequence TLGPFGAISLANARK
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Known secondary structure (DSSP)


SSSS


TT
B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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