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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4qdhA_

Fold library idPDB HeaderMoleculeTitle
c4qdhA_PDB header: immune systemChain: A: PDB Molecule: variable lymphocyte receptor b, toll-like receptor 9PDBTitle: crystal structure of the c-terminal domain of mouse tlr9


Added to library: Sat Jun 14 08:52:19 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSRNNLVTIKPE
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Known secondary structure (DSSP)

TT
TT

SS

SS

S


TT
S

SS





TTTTTT
TT



SS





GG
 .........80.........90.........100.........110.........120.........130.........140
Sequence MFVNLSRLQCLSLSHNSIAQAVNGSQFLPLTNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQPFI
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Known secondary structure (DSSP) GGTT
TT
S

SS



B
SS
SSTT
TT



SS

B


TTTTTT
TT



S

S


 .........150.........160.........170.........180.........190.........200.........210
Sequence GHNFSFVTHLSMLQSLSLAHNDIHTRVSSHLNSNSVRFLDFSGNGMGRMWDEGGLYLHFFQGLSGLLKLD
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Known secondary structure (DSSP)



T
TT


TTS


SSS
S

SS


TTS
STTTTTTTTTTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence LSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLSFLPNLEVLDLAGNQLKALTNGTLPNGTLLQ
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Known secondary structure (DSSP)
TTS

S


TS
TT


TTS

S


GGGGGG
TT


TTS


SB
SS


TT



 .........290.........300.........310.........320.........330.........340.........350
Sequence KLDVSSNSIVSVVPAFFALAVELKEVNLSHNILKTVDRSWFGPIVMNLKELALDTNQLKSVPDGIFDRLT
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Known secondary structure (DSSP)
TTS



B
TTSSTT
TT



SS





TTTS
TTGGG
S

SS





TTTTTT
T
 .........360.........370.........380.........390.........400..
Sequence SLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP
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Known secondary structure (DSSP) T



SS
B



TTTS

BBSSS

BGGG




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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