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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c4q98A_ | PDB header: cell adhesion | Chain: A: PDB Molecule: major fimbrial subunit protein; | PDBTitle: crystal structure of a fimbrilin (fima) from porphyromonas gingivalis2 w83 at 1.30 a resolution (psi community target, nakayama) |
Added to library: Sat Jun 7 08:17:04 2014 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | V | V | E | T | N | A | T | V | S | F | I | I | K | S | G | E | S | R | A | V | G | D | D | L | T | D | A | K | I | T | K | L | T | A | X | V | Y | A | G | Q | V | Q | E | G | I | K | T | V | E | E | D | G | G | V | L | K | V | E | G | I | P | C | K | S | G | A | N | R | V | L |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | B | B | S | S | S | B | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | V | V | V | A | N | H | N | Y | E | L | T | G | K | S | L | N | E | V | E | A | L | T | T | S | L | T | A | E | N | Q | N | A | K | N | L | I | X | T | G | K | S | A | A | F | T | I | K | P | G | S | N | H | Y | G | Y | P | G | G | T | A | S | D | N | L | V | S | A | G | T | P |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | S | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | T | ![]() | ![]() | ![]() | G | G | G | G | G | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | ![]() | ![]() | ![]() | ![]() | ![]() | S | T | T | S | ![]() | ![]() | ![]() | S | T | T |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Sequence | L | A | V | T | R | V | H | A | G | I | S | F | A | G | V | E | V | N | X | A | T | Q | Y | Q | N | Y | Y | S | F | K | P | A | D | A | K | I | A | A | L | V | A | K | K | D | S | K | I | F | G | N | S | L | V | S | N | T | N | A | Y | L | Y | G | V | Q | T | P | A | G | L | Y |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | B | ![]() | ![]() | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G | T | T | T | B | G | G | G | ![]() | ![]() | ![]() | ![]() | ![]() | S | ![]() | ![]() | S | ![]() | ![]() | ![]() | S | S | S | S | S | S | ![]() | ![]() | ![]() | ![]() | S | S | T | T |   | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
Sequence | T | P | D | A | A | G | E | T | Y | E | L | E | A | S | L | N | T | N | Y | A | V | G | A | G | F | Y | V | L | E | S | K | Y | D | A | S | N | E | L | R | P | T | I | L | C | I | Y | G | K | L | L | D | K | D | G | N | P | L | T | E | P | A | L | T | D | A | I | N | A | G | F |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | T | T | ![]() | ![]() | ![]() | ![]() | G | G | G | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | B | T | T | S | S | B | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S |   | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 |
Sequence | C | D | G | D | G | T | T | Y | Y | P | V | L | V | N | Y | D | G | N | G | Y | I | Y | S | G | A | I | T | Q | G | Q | N | K | I | V | R | N | N | H | Y | K | I | S | L | N | I | T | G | P | G | T | N | T | P | E | N | P | Q | P | V | Q | A | N | L | N | V | T | C | Q | V | T |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | T | T | ![]() | ![]() | ![]() | ![]() | S | S | S | S | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | B | S | T | T | S | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() |   | . | . | . | . | . | . | . | ||||||||||
Sequence | P | W | V | V | V | N | Q | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | B | B |
Download: | PDB structure | FASTA sequence |
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