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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4q8jA_

Fold library idPDB HeaderMoleculeTitle
c4q8jA_PDB header: hydrolaseChain: A: PDB Molecule: pab-dependent poly(a)-specific ribonuclease subunit pan2;PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex


Added to library: Sat Jun 7 08:24:47 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MLAYPDYFNDITSDGPISVDDETYPLSSVGMPYYLDKLLSAWPPVVFKSEGTIPQLLAVISSQNEKLSTQ
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Known secondary structure (DSSP)


SS
SSSTTS

S


TT
SSS
TTSS




SS

SS








SS









SS
TTS
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EFPLLRYDRTKYGMRNAIPDYVCLRDIRKQITSGLETSDIQTYTSINKYEVPPAYSRLPLTFDFTPFNNT
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Known secondary structure (DSSP) S





SSSS

STT






T



SSSSSSGGG



SSSSS

TTTS







TTTB
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence EYSGLDPDVDNHYTNAIIQLYRFIPEMFNFVVGCLKDENFETTLLTDLGYLFDMMERSHGKICSSSNFQA
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Known secondary structure (DSSP) SS

B
S
SS
TT
TTS

TT
S
SS
B

 .........220.........230.........240.........250.........260.........270.........280
Sequence SLKSLTDKLESLCIRESIEDSSESIKRNMPQKFNRFLLSQLIKEEAQTVNHNITLNQCFGLETEIRTECS
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Known secondary structure (DSSP) TT










SSSTT


T

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence CDHYDTTVKLLPSLSISGINKQNILPYIEYAMKNVTQKNSICPTCGKTETITQECTVKNLPSVLSLELSL
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Known secondary structure (DSSP) SS


S







STTS




S

 .........360.........370.........380.........390.........400.........410.........420
Sequence LDTEFSNIRSSKNWLTSEFYGSIIKNKAVLRSTASELKGTSHIFKYELNGYVAKITDNNNETRLVTYVKK
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Known secondary structure (DSSP)
SSS
S
STTSSTTTS

SS


TT

 .........430.........440.........450.........460.........470.........480.........490
Sequence YNPKENCFKWLMFNDYLVVEITEEEALKMTYPWKTPEIIIYCDAEELRKPFFSVDTYSINYDILFRDYFA
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Known secondary structure (DSSP) TGGGTT




SSTS



GGGS



S


B
 .........500.........510.........520.........530.........540.........550.........560
Sequence NARREYKLLTHDEAPKSGTLVAIDAEFVSLQSELCEIDHQGIRSIIRPKRTALARISIIRGEEGELYGVP
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Known secondary structure (DSSP)


SS




TTS


SS
SS


TTS
S



SSSTTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence FVDDYVVNTNHIEDYLTRYSGILPGDLDPEKSTKRLVRRNVVYRKVWLLMQLGCVFVGHGLNNDFKHINI
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Known secondary structure (DSSP)


S

SB

TTTS


S

SSS


S


TTTT
BSST
 .........640.........650.........660.........670.........680.........690.........700
Sequence NVPRNQIRDTAIYFLQGKRYLSLRYLAYVLLGMNIQEGNHDSIEDAHTALILYKKYLHLKEKAIFEKVLN
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Known secondary structure (DSSP)


TTT

BSTTTS

SSS


TT


SSSS


S




TT
 .
Sequence S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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