Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4q6rB_

Fold library idPDB HeaderMoleculeTitle
c4q6rB_PDB header: lyase/lyase inhibitorChain: B: PDB Molecule: sphingosine-1-phosphate lyase 1;PDBTitle: crystal structure of human sphingosine-1-phosphate lyase in complex2 with inhibitor 6-[(2r)-4-(4-benzyl-7-chlorophthalazin-1-yl)-2-3 methylpiperazin-1-yl]pyridine-3-carbonitrile


Added to library: Sat May 24 08:37:13 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KEYVKALPSQGLSSSAVLEKLKEYSSMDAFWQEGRASGTVYSGEEKLTELLVKAYGDFAWSNPLHPDIFP
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)




S

SS


TS

GGGT
BSSS
S


TTT

TT
TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence GLRKIEAEIVRIACSLFNGGPDSCGCVTSGGTESILMACKAYRDLAFEKGIKTPEIVAPQSAHAAFNKAA
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) TT

TT
SSTT
SS
TTS
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence SYFGMKIVRVPLTKMMEVDVRAMRRAISRNTAMLVCSTPQFPHGVIDPVPEVAKLAVKYKIPLHVDACLG
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) T

B
TTSSB


TTTT
TTT




T

TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GFLIVFMEKAGYPLEHPFDFRVKGVTSISADTHYGYAPKGSSLVLYSDKKYRNYQFFVDTDWQGGIYASP
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP) TTTTTTT


SS

STTSTT







SS
SSTTT
SS
TT

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence TIAGSRPGGISAACWAALMHFGENGYVEATKQIIKTARFLKSELENIKGIFVFGNPQLSVIALGSRDFDI
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) SS
SS

TT
TT

S


SS
SSS
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence YRLSNLMTAKGWNLNQLQFPPSIHFCITLLHARKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQ
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TT
B
TTTT

TT
STTS


 .........430.........440...
Sequence TTVDRNMVAELSSVFLDSLYSTD
Predicted secondary structure








SS confidence






















Known secondary structure (DSSP)
S
T



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D