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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4q65A_

Fold library idPDB HeaderMoleculeTitle
c4q65A_PDB header: transport proteinChain: A: PDB Molecule: dipeptide permease d;PDBTitle: structure of the e. coli peptide transporter ybgh


Added to library: Sat Aug 16 09:18:39 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYNDTHAYELFSAYCSLVYVTPILGGFLADKVLGN
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Known secondary structure (DSSP)


SSS

TTS
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence RMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYA
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Known secondary structure (DSSP) TTTSTTSTTTTTS
SS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence AGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVRATNFLLPNWGWLLVLL
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Known secondary structure (DSSP) TTT
SS












SSS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence VATPALITILFWKEWSVYALIVATIIGLGVLAKIYENQKQRELGLIVTLTFFSMLFWAFAQQGGSSISLY
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Known secondary structure (DSSP) S



S


 .........290.........300.........310.........320.........330.........340.........350
Sequence IDRFVNTVPTAMFQSINAFAVMLCGVFLAWVVNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGLPL
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Known secondary structure (DSSP) S




GGGG


STT


T
 .........360.........370.........380.........390.........400.........410.........420
Sequence MVLGLAVMGFAELFIDPVAMSQITRIEVTGVLTGIYMLLSGAIANYLAGVIADQTSSINAYIEVFDQITW
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Known secondary structure (DSSP) SSST




 .........430.......
Sequence GALACVGVVLMIWLYQA
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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